Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   ODS73_RS06325 Genome accession   NZ_CP107038
Coordinates   1235099..1236766 (-) Length   555 a.a.
NCBI ID   WP_000923577.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain BM6001     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1230099..1241766
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ODS73_RS06300 (ODS73_06295) - 1231146..1231448 (-) 303 WP_000590559.1 PTS sugar transporter subunit IIB -
  ODS73_RS06305 (ODS73_06300) - 1231486..1231962 (-) 477 WP_284060499.1 PTS sugar transporter subunit IIA -
  ODS73_RS06310 (ODS73_06305) - 1232144..1232386 (+) 243 WP_088783053.1 hypothetical protein -
  ODS73_RS06315 (ODS73_06310) lepA 1232467..1234290 (-) 1824 WP_001047216.1 translation elongation factor 4 -
  ODS73_RS06320 (ODS73_06315) - 1234369..1235097 (-) 729 WP_000133333.1 metallophosphoesterase family protein -
  ODS73_RS06325 (ODS73_06320) recN 1235099..1236766 (-) 1668 WP_000923577.1 DNA repair protein RecN Machinery gene
  ODS73_RS06330 (ODS73_06325) - 1236773..1237204 (-) 432 WP_001034412.1 arginine repressor -
  ODS73_RS06335 (ODS73_06330) - 1237197..1238012 (-) 816 WP_001041079.1 TlyA family RNA methyltransferase -
  ODS73_RS06340 (ODS73_06335) - 1238005..1238880 (-) 876 WP_044811406.1 polyprenyl synthetase family protein -
  ODS73_RS06345 (ODS73_06340) - 1238877..1239089 (-) 213 WP_284060500.1 exodeoxyribonuclease VII small subunit -
  ODS73_RS06350 (ODS73_06345) xseA 1239067..1240407 (-) 1341 WP_284060501.1 exodeoxyribonuclease VII large subunit -
  ODS73_RS06355 (ODS73_06350) udk 1240535..1241173 (-) 639 WP_001181378.1 uridine kinase -
  ODS73_RS06360 (ODS73_06355) - 1241281..1241583 (-) 303 WP_000985093.1 bacteriocin immunity protein -

Sequence

Protein


Download         Length: 555 a.a.        Molecular weight: 62782.18 Da        Isoelectric Point: 4.6517

>NTDB_id=640120 ODS73_RS06325 WP_000923577.1 1235099..1236766(-) (recN) [Streptococcus pneumoniae strain BM6001]
MLLEISIKNFAIIEAISLNFEKGMTVLTGETGAGKSIIIDAMNMMLGARATTDVIRHGAPKAEIEGLFSVENSRLLQEIF
DEQGLELGDEIIIRREILQNGRSISRVNGQMVNLSVLRAIGQHLVDIHGQHDHEELMRPQLHIQMLDEFGDAAFWDLKET
YQTSFDAYRKMRKQVLEVKKNQQEHKARIEMLEFQMAEIEAANLQAGEDLALNQERDKLLNHKNIADTLTNAYSMLDNED
FSSLANVRSAMNDMESVEEYDSEYREISSSLSETYYVLEDISKRLEAIIEDLDFDGNRLMQVENRLDLLHTITRKYGGTV
DDVLLYFAKITEEYNLLTGNNLSSEDMEAELKKLEVNLVNLAGQLASARHNLAQQLEAEIKQELQDLYMEKAQFQVRFSK
GKFSREGNEMVEFYISTNPGEDFKPLVKVASGGELSRLMLAIKSAFSRKEGKTSIVFDEVDTGVSGRVAQAIAQKIHKIG
QHGQVLAISHLPQVIAIADYQFFIEKISNDHSTVSTVRLLTVEERVEEVAKMLAGDDVTEAALTQARELLRNREK

Nucleotide


Download         Length: 1668 bp        

>NTDB_id=640120 ODS73_RS06325 WP_000923577.1 1235099..1236766(-) (recN) [Streptococcus pneumoniae strain BM6001]
ATGTTACTTGAAATTTCGATAAAAAACTTTGCCATTATTGAGGCTATTTCCCTCAATTTTGAAAAGGGGATGACTGTCCT
GACTGGTGAAACGGGTGCAGGGAAGTCGATTATCATTGATGCCATGAATATGATGTTGGGAGCTCGTGCGACGACAGATG
TTATTCGTCATGGTGCACCAAAGGCAGAGATTGAGGGGCTTTTCTCAGTTGAGAATAGTCGTCTTTTACAGGAAATTTTT
GATGAGCAAGGTTTAGAATTAGGTGATGAAATTATCATCCGTCGGGAAATCTTGCAAAATGGTCGTAGTATCAGCCGTGT
AAATGGTCAGATGGTTAATCTGTCTGTTTTGCGAGCTATTGGGCAACATCTTGTAGATATTCATGGTCAGCATGACCATG
AGGAGTTAATGCGTCCCCAACTGCATATCCAGATGTTGGATGAATTTGGTGATGCCGCTTTTTGGGACTTGAAAGAAACC
TATCAAACGAGTTTTGATGCCTATCGGAAAATGCGCAAGCAGGTTCTGGAAGTCAAGAAAAACCAACAGGAACACAAGGC
ACGTATCGAAATGTTGGAATTTCAAATGGCAGAGATTGAGGCAGCAAACTTGCAGGCTGGAGAAGACTTGGCTCTCAATC
AAGAGCGAGATAAACTCCTCAACCACAAAAATATTGCGGATACACTGACCAATGCCTACAGTATGTTGGACAATGAAGAT
TTTTCAAGTCTGGCCAATGTTCGTTCAGCCATGAATGACATGGAAAGTGTCGAAGAGTATGATTCTGAATACCGTGAAAT
TTCAAGCTCTCTGTCTGAGACCTACTATGTTTTAGAAGACATTAGCAAACGTTTGGAAGCTATCATTGAGGACCTTGATT
TTGATGGCAATCGCCTGATGCAGGTTGAGAATCGTTTGGACCTCCTTCATACTATTACTCGTAAGTATGGTGGGACTGTT
GATGATGTTTTGCTTTATTTTGCCAAGATTACGGAAGAATACAATCTCTTGACAGGCAATAATCTTTCGTCTGAGGACAT
GGAAGCAGAGCTTAAGAAGTTGGAAGTCAATCTTGTCAATTTGGCAGGTCAACTTGCTTCTGCTCGTCATAATTTGGCTC
AGCAACTCGAAGCTGAGATTAAACAAGAACTGCAAGATCTTTATATGGAAAAAGCCCAGTTTCAGGTTCGTTTTAGTAAG
GGAAAATTCAGTCGTGAGGGAAATGAAATGGTTGAGTTTTATATTTCAACCAACCCTGGAGAAGACTTTAAACCCTTGGT
TAAGGTTGCTTCTGGAGGGGAATTATCTCGTCTCATGTTAGCCATTAAGTCTGCCTTTTCACGTAAAGAAGGCAAGACTA
GCATTGTCTTTGATGAGGTGGATACGGGAGTTTCAGGTCGTGTTGCTCAAGCTATTGCTCAGAAAATTCATAAAATTGGT
CAGCATGGTCAGGTTTTGGCTATCTCCCATTTGCCACAAGTAATTGCGATTGCAGATTATCAATTCTTTATTGAGAAGAT
TAGTAATGACCATTCAACGGTTTCGACTGTTCGTCTCTTGACGGTCGAAGAGCGAGTGGAGGAAGTTGCCAAGATGTTGG
CAGGTGATGATGTGACAGAAGCAGCCCTGACGCAAGCCAGAGAATTGTTGAGAAACAGGGAGAAATAA

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-510)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

42.958

100

0.44