Detailed information
Overview
| Name | comYA | Type | Machinery gene |
| Locus tag | LV497_RS04280 | Genome accession | NZ_CP090007 |
| Coordinates | 989711..990652 (-) | Length | 313 a.a. |
| NCBI ID | WP_022496097.1 | Uniprot ID | - |
| Organism | Streptococcus salivarius strain SALI-10 | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 984711..995652
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LV497_RS04240 (LV497_04240) | - | 984786..985979 (-) | 1194 | WP_002885831.1 | acetate kinase | - |
| LV497_RS04245 (LV497_04245) | comYH | 986036..986992 (-) | 957 | WP_022496101.1 | class I SAM-dependent methyltransferase | Machinery gene |
| LV497_RS04250 (LV497_04250) | comGG | 987037..987354 (-) | 318 | WP_021144683.1 | competence type IV pilus minor pilin ComGG | - |
| LV497_RS04255 (LV497_04255) | comYF | 987332..987769 (-) | 438 | WP_022496100.1 | competence type IV pilus minor pilin ComGF | Machinery gene |
| LV497_RS04260 (LV497_04260) | comGE | 987756..987986 (-) | 231 | WP_002887015.1 | competence type IV pilus minor pilin ComGE | - |
| LV497_RS04265 (LV497_04265) | comYD | 988018..988446 (-) | 429 | WP_014632541.1 | competence type IV pilus minor pilin ComGD | Machinery gene |
| LV497_RS04270 (LV497_04270) | comYC | 988406..988720 (-) | 315 | WP_037611125.1 | competence type IV pilus major pilin ComGC | Machinery gene |
| LV497_RS04275 (LV497_04275) | comYB | 988729..989829 (-) | 1101 | WP_156024868.1 | competence type IV pilus assembly protein ComGB | Machinery gene |
| LV497_RS04280 (LV497_04280) | comYA | 989711..990652 (-) | 942 | WP_022496097.1 | competence type IV pilus ATPase ComGA | Machinery gene |
| LV497_RS04285 (LV497_04285) | - | 990732..991094 (-) | 363 | WP_245085384.1 | DUF1033 family protein | - |
| LV497_RS04290 (LV497_04290) | rpoC | 991257..994895 (-) | 3639 | WP_022496096.1 | DNA-directed RNA polymerase subunit beta' | - |
Sequence
Protein
Download Length: 313 a.a. Molecular weight: 35324.37 Da Isoelectric Point: 5.7065
>NTDB_id=640120 LV497_RS04280 WP_022496097.1 989711..990652(-) (comYA) [Streptococcus salivarius strain SALI-10]
MVTEFAKEMIKNADSCGAQDIYVIPRQENYELYMRVGQERRLIDVYRPDFMASLIGHFKFVAGMMVGEKRRSQLGSCDYD
CGDGQRVSLRLSTVGDYRGLESLVIRVLHSERRELVYWNQGIQPIMDALDYRGLYLFAGPVGSGKTTLMHELVQERFKGQ
QVISIEDPVEIKQDNVLQLQVNQAIDMTYDNLIKLSLRHRPDVLIIGEIRDKETARAVIRASLTGVTVLSTIHAKSVAGV
YERLLDLGVDKSELDNALQGIAYMRLIKGGGVIDFASENFQSHSSTNWNQQLEGLVKQGYLTEGDIQGEKIKD
MVTEFAKEMIKNADSCGAQDIYVIPRQENYELYMRVGQERRLIDVYRPDFMASLIGHFKFVAGMMVGEKRRSQLGSCDYD
CGDGQRVSLRLSTVGDYRGLESLVIRVLHSERRELVYWNQGIQPIMDALDYRGLYLFAGPVGSGKTTLMHELVQERFKGQ
QVISIEDPVEIKQDNVLQLQVNQAIDMTYDNLIKLSLRHRPDVLIIGEIRDKETARAVIRASLTGVTVLSTIHAKSVAGV
YERLLDLGVDKSELDNALQGIAYMRLIKGGGVIDFASENFQSHSSTNWNQQLEGLVKQGYLTEGDIQGEKIKD
Nucleotide
Download Length: 942 bp
>NTDB_id=640120 LV497_RS04280 WP_022496097.1 989711..990652(-) (comYA) [Streptococcus salivarius strain SALI-10]
ATGGTAACAGAATTTGCTAAGGAAATGATCAAAAATGCTGATAGTTGTGGGGCTCAAGACATCTATGTCATTCCACGTCA
GGAAAATTATGAGCTCTATATGCGAGTTGGCCAGGAGAGGAGATTAATTGATGTATATCGGCCTGATTTCATGGCTAGTC
TTATTGGTCACTTTAAATTTGTGGCGGGAATGATGGTGGGTGAGAAGCGTAGGAGTCAACTAGGTTCCTGTGACTATGAT
TGTGGTGATGGTCAAAGGGTTTCTTTGCGTTTGTCTACCGTTGGGGATTATCGTGGCTTAGAAAGTTTAGTTATTCGTGT
TCTACATTCCGAACGTCGAGAATTAGTGTACTGGAATCAAGGAATCCAGCCTATTATGGATGCTTTGGATTATCGTGGCT
TATATCTCTTTGCAGGTCCCGTTGGTTCTGGAAAGACTACGCTTATGCATGAGTTGGTTCAGGAGCGTTTTAAGGGGCAG
CAGGTGATTTCGATTGAGGATCCTGTGGAAATTAAACAGGATAATGTTTTGCAACTTCAGGTGAATCAAGCAATTGACAT
GACCTATGATAATTTGATTAAGCTATCACTGCGTCACCGCCCGGATGTTTTGATTATTGGAGAAATTCGAGATAAGGAGA
CTGCTCGAGCGGTTATTAGAGCTAGTCTGACGGGAGTGACTGTTCTTTCAACTATTCACGCAAAGAGTGTGGCAGGTGTT
TATGAGCGTCTTCTGGACCTTGGTGTAGATAAGTCCGAGTTGGATAATGCCCTTCAAGGGATTGCCTACATGCGTCTGAT
TAAGGGAGGAGGTGTGATTGATTTTGCCAGTGAAAATTTCCAAAGCCATTCGTCAACCAACTGGAACCAGCAGTTGGAAG
GCTTGGTTAAACAAGGATATCTCACTGAAGGGGATATCCAAGGGGAAAAAATTAAAGATTAA
ATGGTAACAGAATTTGCTAAGGAAATGATCAAAAATGCTGATAGTTGTGGGGCTCAAGACATCTATGTCATTCCACGTCA
GGAAAATTATGAGCTCTATATGCGAGTTGGCCAGGAGAGGAGATTAATTGATGTATATCGGCCTGATTTCATGGCTAGTC
TTATTGGTCACTTTAAATTTGTGGCGGGAATGATGGTGGGTGAGAAGCGTAGGAGTCAACTAGGTTCCTGTGACTATGAT
TGTGGTGATGGTCAAAGGGTTTCTTTGCGTTTGTCTACCGTTGGGGATTATCGTGGCTTAGAAAGTTTAGTTATTCGTGT
TCTACATTCCGAACGTCGAGAATTAGTGTACTGGAATCAAGGAATCCAGCCTATTATGGATGCTTTGGATTATCGTGGCT
TATATCTCTTTGCAGGTCCCGTTGGTTCTGGAAAGACTACGCTTATGCATGAGTTGGTTCAGGAGCGTTTTAAGGGGCAG
CAGGTGATTTCGATTGAGGATCCTGTGGAAATTAAACAGGATAATGTTTTGCAACTTCAGGTGAATCAAGCAATTGACAT
GACCTATGATAATTTGATTAAGCTATCACTGCGTCACCGCCCGGATGTTTTGATTATTGGAGAAATTCGAGATAAGGAGA
CTGCTCGAGCGGTTATTAGAGCTAGTCTGACGGGAGTGACTGTTCTTTCAACTATTCACGCAAAGAGTGTGGCAGGTGTT
TATGAGCGTCTTCTGGACCTTGGTGTAGATAAGTCCGAGTTGGATAATGCCCTTCAAGGGATTGCCTACATGCGTCTGAT
TAAGGGAGGAGGTGTGATTGATTTTGCCAGTGAAAATTTCCAAAGCCATTCGTCAACCAACTGGAACCAGCAGTTGGAAG
GCTTGGTTAAACAAGGATATCTCACTGAAGGGGATATCCAAGGGGAAAAAATTAAAGATTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comYA | Streptococcus mutans UA159 |
65.495 |
100 |
0.655 |
| comYA | Streptococcus mutans UA140 |
65.495 |
100 |
0.655 |
| comGA/cglA/cilD | Streptococcus mitis NCTC 12261 |
65.273 |
99.361 |
0.649 |
| comGA/cglA/cilD | Streptococcus pneumoniae Rx1 |
64.309 |
99.361 |
0.639 |
| comGA/cglA/cilD | Streptococcus pneumoniae D39 |
64.309 |
99.361 |
0.639 |
| comGA/cglA/cilD | Streptococcus pneumoniae R6 |
64.309 |
99.361 |
0.639 |
| comGA/cglA/cilD | Streptococcus pneumoniae TIGR4 |
64.309 |
99.361 |
0.639 |
| comYA | Streptococcus gordonii str. Challis substr. CH1 |
62.62 |
100 |
0.626 |
| comGA/cglA | Streptococcus sobrinus strain NIDR 6715-7 |
60.897 |
99.681 |
0.607 |
| comGA | Lactococcus lactis subsp. cremoris KW2 |
51.447 |
99.361 |
0.511 |
| comGA | Latilactobacillus sakei subsp. sakei 23K |
41.697 |
86.581 |
0.361 |