Detailed information    

insolico Bioinformatically predicted

Overview


Name   comYA   Type   Machinery gene
Locus tag   LV497_RS04280 Genome accession   NZ_CP090007
Coordinates   989711..990652 (-) Length   313 a.a.
NCBI ID   WP_022496097.1    Uniprot ID   -
Organism   Streptococcus salivarius strain SALI-10     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context


Location: 984711..995652
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LV497_RS04240 (LV497_04240) - 984786..985979 (-) 1194 WP_002885831.1 acetate kinase -
  LV497_RS04245 (LV497_04245) comYH 986036..986992 (-) 957 WP_022496101.1 class I SAM-dependent methyltransferase Machinery gene
  LV497_RS04250 (LV497_04250) comGG 987037..987354 (-) 318 WP_021144683.1 competence type IV pilus minor pilin ComGG -
  LV497_RS04255 (LV497_04255) comYF 987332..987769 (-) 438 WP_022496100.1 competence type IV pilus minor pilin ComGF Machinery gene
  LV497_RS04260 (LV497_04260) comGE 987756..987986 (-) 231 WP_002887015.1 competence type IV pilus minor pilin ComGE -
  LV497_RS04265 (LV497_04265) comYD 988018..988446 (-) 429 WP_014632541.1 competence type IV pilus minor pilin ComGD Machinery gene
  LV497_RS04270 (LV497_04270) comYC 988406..988720 (-) 315 WP_037611125.1 competence type IV pilus major pilin ComGC Machinery gene
  LV497_RS04275 (LV497_04275) comYB 988729..989829 (-) 1101 WP_156024868.1 competence type IV pilus assembly protein ComGB Machinery gene
  LV497_RS04280 (LV497_04280) comYA 989711..990652 (-) 942 WP_022496097.1 competence type IV pilus ATPase ComGA Machinery gene
  LV497_RS04285 (LV497_04285) - 990732..991094 (-) 363 WP_245085384.1 DUF1033 family protein -
  LV497_RS04290 (LV497_04290) rpoC 991257..994895 (-) 3639 WP_022496096.1 DNA-directed RNA polymerase subunit beta' -

Sequence


Protein


Download         Length: 313 a.a.        Molecular weight: 35324.37 Da        Isoelectric Point: 5.7065

>NTDB_id=640120 LV497_RS04280 WP_022496097.1 989711..990652(-) (comYA) [Streptococcus salivarius strain SALI-10]
MVTEFAKEMIKNADSCGAQDIYVIPRQENYELYMRVGQERRLIDVYRPDFMASLIGHFKFVAGMMVGEKRRSQLGSCDYD
CGDGQRVSLRLSTVGDYRGLESLVIRVLHSERRELVYWNQGIQPIMDALDYRGLYLFAGPVGSGKTTLMHELVQERFKGQ
QVISIEDPVEIKQDNVLQLQVNQAIDMTYDNLIKLSLRHRPDVLIIGEIRDKETARAVIRASLTGVTVLSTIHAKSVAGV
YERLLDLGVDKSELDNALQGIAYMRLIKGGGVIDFASENFQSHSSTNWNQQLEGLVKQGYLTEGDIQGEKIKD

Nucleotide


Download         Length: 942 bp        

>NTDB_id=640120 LV497_RS04280 WP_022496097.1 989711..990652(-) (comYA) [Streptococcus salivarius strain SALI-10]
ATGGTAACAGAATTTGCTAAGGAAATGATCAAAAATGCTGATAGTTGTGGGGCTCAAGACATCTATGTCATTCCACGTCA
GGAAAATTATGAGCTCTATATGCGAGTTGGCCAGGAGAGGAGATTAATTGATGTATATCGGCCTGATTTCATGGCTAGTC
TTATTGGTCACTTTAAATTTGTGGCGGGAATGATGGTGGGTGAGAAGCGTAGGAGTCAACTAGGTTCCTGTGACTATGAT
TGTGGTGATGGTCAAAGGGTTTCTTTGCGTTTGTCTACCGTTGGGGATTATCGTGGCTTAGAAAGTTTAGTTATTCGTGT
TCTACATTCCGAACGTCGAGAATTAGTGTACTGGAATCAAGGAATCCAGCCTATTATGGATGCTTTGGATTATCGTGGCT
TATATCTCTTTGCAGGTCCCGTTGGTTCTGGAAAGACTACGCTTATGCATGAGTTGGTTCAGGAGCGTTTTAAGGGGCAG
CAGGTGATTTCGATTGAGGATCCTGTGGAAATTAAACAGGATAATGTTTTGCAACTTCAGGTGAATCAAGCAATTGACAT
GACCTATGATAATTTGATTAAGCTATCACTGCGTCACCGCCCGGATGTTTTGATTATTGGAGAAATTCGAGATAAGGAGA
CTGCTCGAGCGGTTATTAGAGCTAGTCTGACGGGAGTGACTGTTCTTTCAACTATTCACGCAAAGAGTGTGGCAGGTGTT
TATGAGCGTCTTCTGGACCTTGGTGTAGATAAGTCCGAGTTGGATAATGCCCTTCAAGGGATTGCCTACATGCGTCTGAT
TAAGGGAGGAGGTGTGATTGATTTTGCCAGTGAAAATTTCCAAAGCCATTCGTCAACCAACTGGAACCAGCAGTTGGAAG
GCTTGGTTAAACAAGGATATCTCACTGAAGGGGATATCCAAGGGGAAAAAATTAAAGATTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYA Streptococcus mutans UA159

65.495

100

0.655

  comYA Streptococcus mutans UA140

65.495

100

0.655

  comGA/cglA/cilD Streptococcus mitis NCTC 12261

65.273

99.361

0.649

  comGA/cglA/cilD Streptococcus pneumoniae Rx1

64.309

99.361

0.639

  comGA/cglA/cilD Streptococcus pneumoniae D39

64.309

99.361

0.639

  comGA/cglA/cilD Streptococcus pneumoniae R6

64.309

99.361

0.639

  comGA/cglA/cilD Streptococcus pneumoniae TIGR4

64.309

99.361

0.639

  comYA Streptococcus gordonii str. Challis substr. CH1

62.62

100

0.626

  comGA/cglA Streptococcus sobrinus strain NIDR 6715-7

60.897

99.681

0.607

  comGA Lactococcus lactis subsp. cremoris KW2

51.447

99.361

0.511

  comGA Latilactobacillus sakei subsp. sakei 23K

41.697

86.581

0.361