Detailed information    

insolico Bioinformatically predicted

Overview

Name   xerS   Type   Machinery gene
Locus tag   ODS73_RS06135 Genome accession   NZ_CP107038
Coordinates   1195003..1196073 (+) Length   356 a.a.
NCBI ID   WP_284060497.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain BM6001     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1190003..1201073
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ODS73_RS06120 (ODS73_06115) ylqF 1191326..1192177 (+) 852 WP_000201286.1 ribosome biogenesis GTPase YlqF -
  ODS73_RS06125 (ODS73_06120) - 1192164..1192943 (+) 780 WP_000201121.1 ribonuclease HII -
  ODS73_RS06130 (ODS73_06125) - 1192959..1194509 (+) 1551 WP_000392542.1 ClC family H(+)/Cl(-) exchange transporter -
  ODS73_RS06135 (ODS73_06130) xerS 1195003..1196073 (+) 1071 WP_284060497.1 tyrosine recombinase XerS Machinery gene
  ODS73_RS06140 (ODS73_06135) - 1196146..1197135 (-) 990 WP_000873995.1 lipoate--protein ligase -
  ODS73_RS06145 (ODS73_06140) lpdA 1197199..1198902 (-) 1704 WP_001162912.1 dihydrolipoyl dehydrogenase -
  ODS73_RS06150 (ODS73_06145) - 1198948..1199991 (-) 1044 WP_000752697.1 dihydrolipoamide acetyltransferase -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 41185.24 Da        Isoelectric Point: 9.6220

>NTDB_id=640117 ODS73_RS06135 WP_284060497.1 1195003..1196073(+) (xerS) [Streptococcus pneumoniae strain BM6001]
MKREILLERIDKLKQLMPWYVLEYYQSKLAVPYSFTTLYEYLKEYDRFFSWVLESGISNADKISDIPLSVLENMSKKDME
SFILYLRERPLLNANTTKQGVSQTTINRTLSALSSLYKYLTEEVENDQGEPYFYRNVMKKISTKKKKETLAARAENIKQK
LFLGDETEGFLTYIDQEHPQQLSNRALSSFNKNKERDLAIIALLLASGVRLSEAVNLDLRDLNLKMMVIDVTRKGGKRDS
VNVAAFAKPYLENYLAIRNQRYKTEKTDTALFLTLYRGVPNRIDASSVEKMVAKYSEDFKVRVTPHKLRHTLATRLYDAT
KSQVLVSHQLGHASTQVTDLYTHIVNDEQKNALDSL

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=640117 ODS73_RS06135 WP_284060497.1 1195003..1196073(+) (xerS) [Streptococcus pneumoniae strain BM6001]
ATGAAACGTGAGATTTTACTGGAACGAATCGACAAACTAAAACAACTCATGCCCTGGTATGTTCTGGAATACTACCAATC
TAAGCTGGCTGTACCCTACAGTTTTACAACCCTGTACGAATACCTTAAGGAATATGACCGATTTTTCAGCTGGGTTTTGG
AGTCTGGTATTTCAAACGCTGATAAAATATCCGATATTCCTTTATCAGTTTTGGAAAATATGTCTAAGAAAGACATGGAA
TCCTTTATCCTTTATCTACGTGAACGTCCCTTGCTGAATGCTAATACAACAAAACAGGGTGTTTCACAGACAACTATCAA
TCGAACCTTATCAGCACTTTCTAGTCTTTACAAGTATCTAACCGAGGAGGTTGAAAACGATCAGGGGGAACCTTATTTCT
ATCGTAATGTAATGAAAAAAATTTCAACCAAGAAAAAGAAAGAAACCCTTGCTGCCAGAGCTGAAAATATCAAGCAAAAA
CTCTTTCTAGGTGATGAAACAGAAGGTTTTCTAACTTATATCGATCAAGAGCACCCACAACAGCTTTCAAATCGAGCTCT
CTCATCATTCAACAAAAATAAAGAACGAGATTTAGCCATTATTGCCCTTCTCTTGGCATCTGGTGTTCGCTTATCTGAAG
CTGTTAATCTAGATCTAAGAGATCTCAATCTAAAAATGATGGTTATTGATGTTACTCGAAAAGGTGGCAAACGTGACTCA
GTCAATGTCGCTGCTTTTGCTAAACCTTATTTAGAGAATTATCTGGCCATTCGGAATCAACGCTATAAAACGGAAAAAAC
AGATACAGCCCTTTTTTTAACTCTCTACAGAGGTGTTCCTAATCGTATCGATGCTTCTAGCGTTGAGAAAATGGTTGCTA
AATACTCAGAGGATTTTAAAGTGCGTGTAACACCCCATAAACTGCGCCATACGCTAGCAACTAGGCTCTATGATGCGACT
AAATCACAAGTTTTAGTCAGTCACCAACTAGGACATGCCAGCACACAAGTCACTGACCTCTATACCCATATTGTTAATGA
TGAACAAAAGAATGCTCTAGATAGTTTATAA

Domains

Predicted by InterProScan.

Phage integrase family (Phage_integrase)

(188-344)

Phage integrase, N-terminal SAM-like domain (Phage_int_SAM_1)

(71-123)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xerS Streptococcus pneumoniae R6

99.719

100

0.997