Detailed information NTG0640117

Bioinformatically predicted

Overview

• Name: comYD
• Type: Machinery gene
• Locus tag: LV497_RS04265
• Genome accession: NZ_CP090007
• Coordinates: 988018..988446 (-)
• Length: 142 a.a.
• NCBI ID: WP_014632541.1
• Uniprot ID: -
• Organism: Streptococcus salivarius strain SALI-10
• Function: dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 983018..993446

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LV497_RS04225 (LV497_04225)	-	983146..983592 (-)	447	WP_022496102.1	hypothetical protein	-
LV497_RS04230 (LV497_04230)	-	983670..984326 (-)	657	WP_002885876.1	CPBP family intramembrane glutamic endopeptidase	-
LV497_RS04235 (LV497_04235)	-	984338..984535 (-)	198	WP_002885716.1	helix-turn-helix transcriptional regulator	-
LV497_RS04240 (LV497_04240)	-	984786..985979 (-)	1194	WP_002885831.1	acetate kinase	-
LV497_RS04245 (LV497_04245)	comYH	986036..986992 (-)	957	WP_022496101.1	class I SAM-dependent methyltransferase	Machinery gene
LV497_RS04250 (LV497_04250)	comGG	987037..987354 (-)	318	WP_021144683.1	competence type IV pilus minor pilin ComGG	-
LV497_RS04255 (LV497_04255)	comYF	987332..987769 (-)	438	WP_022496100.1	competence type IV pilus minor pilin ComGF	Machinery gene
LV497_RS04260 (LV497_04260)	comGE	987756..987986 (-)	231	WP_002887015.1	competence type IV pilus minor pilin ComGE	-
LV497_RS04265 (LV497_04265)	comYD	988018..988446 (-)	429	WP_014632541.1	competence type IV pilus minor pilin ComGD	Machinery gene
LV497_RS04270 (LV497_04270)	comYC	988406..988720 (-)	315	WP_037611125.1	competence type IV pilus major pilin ComGC	Machinery gene
LV497_RS04275 (LV497_04275)	comYB	988729..989829 (-)	1101	WP_156024868.1	competence type IV pilus assembly protein ComGB	Machinery gene
LV497_RS04280 (LV497_04280)	comYA	989711..990652 (-)	942	WP_022496097.1	competence type IV pilus ATPase ComGA	Machinery gene
LV497_RS04285 (LV497_04285)	-	990732..991094 (-)	363	WP_245085384.1	DUF1033 family protein	-

Sequence

Protein

• Length: 142 a.a.
• Molecular weight: 15729.16 Da
• Isoelectric Point: 10.3019

>NTDB_id=640117 LV497_RS04265 WP_014632541.1 988018..988446(-) (comYD) [Streptococcus salivarius strain SALI-10]
MRNMVAKAAQWPIRAFTLLESLVTLAVVAFLTLSLSGSVTGIFQQVETNLFYLRFEYLYRDSQRLAAAEGSNVELQLSKD
KISNGKSSLVIPKNIHLDKGQTLVFDAKGGNSSLTKIRFSSDKEVVTYQLNMGSGKYKKTVS

Nucleotide

• Length: 429 bp

>NTDB_id=640117 LV497_RS04265 WP_014632541.1 988018..988446(-) (comYD) [Streptococcus salivarius strain SALI-10]
ATGCGAAACATGGTGGCGAAAGCCGCTCAGTGGCCAATTAGAGCCTTTACCTTGTTGGAGAGTCTGGTGACTCTAGCAGT
GGTTGCCTTTCTCACTCTGAGTTTATCAGGCTCAGTCACAGGTATTTTTCAGCAGGTTGAGACTAATCTTTTTTATCTGC
GCTTTGAGTACCTATACCGAGATAGTCAGCGCTTGGCAGCGGCGGAAGGGTCCAATGTTGAATTGCAGTTGTCCAAGGAT
AAAATCAGTAACGGAAAATCAAGTCTGGTGATTCCTAAAAATATACATCTGGATAAGGGGCAGACGCTAGTGTTTGATGC
CAAAGGAGGCAACTCTAGCCTCACAAAGATTCGTTTTTCAAGTGATAAGGAGGTGGTGACCTATCAGCTTAACATGGGCA
GCGGTAAATATAAAAAGACGGTCTCTTAG

Domains

No domain identified.

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comYD	Streptococcus mutans UA140	54.962	92.254	0.507
comYD	Streptococcus mutans UA159	54.962	92.254	0.507
comYD	Streptococcus gordonii str. Challis substr. CH1	42.857	98.592	0.423
comGD/cglD	Streptococcus pneumoniae Rx1	45.669	89.437	0.408
comGD/cglD	Streptococcus pneumoniae D39	45.669	89.437	0.408
comGD/cglD	Streptococcus pneumoniae R6	45.669	89.437	0.408
comGD/cglD	Streptococcus mitis NCTC 12261	45.669	89.437	0.408
comGD/cglD	Streptococcus mitis SK321	44.882	89.437	0.401
comGD/cglD	Streptococcus pneumoniae TIGR4	44.882	89.437	0.401
comGD	Lactococcus lactis subsp. cremoris KW2	41.667	92.958	0.387