Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYH   Type   Machinery gene
Locus tag   LV497_RS04245 Genome accession   NZ_CP090007
Coordinates   986036..986992 (-) Length   318 a.a.
NCBI ID   WP_022496101.1    Uniprot ID   A0AB33ZDB8
Organism   Streptococcus salivarius strain SALI-10     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 981036..991992
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LV497_RS04215 (LV497_04215) proC 981574..982344 (+) 771 WP_022496104.1 pyrroline-5-carboxylate reductase -
  LV497_RS04220 (LV497_04220) - 982371..983033 (-) 663 WP_022496103.1 CPBP family intramembrane glutamic endopeptidase -
  LV497_RS04225 (LV497_04225) - 983146..983592 (-) 447 WP_022496102.1 hypothetical protein -
  LV497_RS04230 (LV497_04230) - 983670..984326 (-) 657 WP_002885876.1 CPBP family intramembrane glutamic endopeptidase -
  LV497_RS04235 (LV497_04235) - 984338..984535 (-) 198 WP_002885716.1 helix-turn-helix transcriptional regulator -
  LV497_RS04240 (LV497_04240) - 984786..985979 (-) 1194 WP_002885831.1 acetate kinase -
  LV497_RS04245 (LV497_04245) comYH 986036..986992 (-) 957 WP_022496101.1 class I SAM-dependent methyltransferase Machinery gene
  LV497_RS04250 (LV497_04250) comGG 987037..987354 (-) 318 WP_021144683.1 competence type IV pilus minor pilin ComGG -
  LV497_RS04255 (LV497_04255) comYF 987332..987769 (-) 438 WP_022496100.1 competence type IV pilus minor pilin ComGF Machinery gene
  LV497_RS04260 (LV497_04260) comGE 987756..987986 (-) 231 WP_002887015.1 competence type IV pilus minor pilin ComGE -
  LV497_RS04265 (LV497_04265) comYD 988018..988446 (-) 429 WP_014632541.1 competence type IV pilus minor pilin ComGD Machinery gene
  LV497_RS04270 (LV497_04270) comYC 988406..988720 (-) 315 WP_037611125.1 competence type IV pilus major pilin ComGC Machinery gene
  LV497_RS04275 (LV497_04275) comYB 988729..989829 (-) 1101 WP_156024868.1 competence type IV pilus assembly protein ComGB Machinery gene
  LV497_RS04280 (LV497_04280) comYA 989711..990652 (-) 942 WP_022496097.1 competence type IV pilus ATPase ComGA Machinery gene
  LV497_RS04285 (LV497_04285) - 990732..991094 (-) 363 WP_245085384.1 DUF1033 family protein -

Sequence

Protein


Download         Length: 318 a.a.        Molecular weight: 35759.71 Da        Isoelectric Point: 4.4586

>NTDB_id=640115 LV497_RS04245 WP_022496101.1 986036..986992(-) (comYH) [Streptococcus salivarius strain SALI-10]
MNFEAIETAFELLLENVQTIENDLGTHAYDALIEQNSYYLGAEVANEVIIKNNKKLRALNLSKEEWRRAFQFLFIKLGQL
EALQANHQFTPDAIGFIILYLLEGLTKDDQLDVLEIGSGTGNLAETLLNNSQKTLNYMGMEVDDLLIDLSASIADVVNSS
AVYIQEDAVRPHILKESDVIISDLPVGYYPNDEIASRFKVAATGEHTYAHHLLMEQSLKYLKKDGIAILLAPTNLLTSPQ
SDLLKKWLSGYADIIAVITLPEAAFGNKHNMKSIFVLKKQTENAPETFVYPLSDLQNPEVLKDFTENFQKWKSDNSIF

Nucleotide


Download         Length: 957 bp        

>NTDB_id=640115 LV497_RS04245 WP_022496101.1 986036..986992(-) (comYH) [Streptococcus salivarius strain SALI-10]
ATGAATTTTGAAGCAATTGAGACAGCCTTTGAGCTGTTGTTAGAAAATGTCCAAACCATTGAAAATGATCTTGGAACCCA
TGCTTACGATGCGCTTATTGAGCAAAATTCCTATTATTTGGGGGCTGAGGTAGCTAATGAAGTCATCATCAAAAACAACA
AGAAATTACGTGCCCTTAATCTAAGCAAAGAGGAGTGGCGTCGTGCTTTTCAGTTCTTGTTTATCAAGCTAGGGCAATTG
GAAGCCTTACAAGCCAATCACCAGTTTACACCTGATGCTATTGGATTTATCATTCTTTACCTACTTGAAGGTTTGACCAA
GGACGACCAATTAGATGTTTTGGAGATTGGTTCGGGGACAGGAAACTTGGCTGAAACTCTTCTAAATAATAGTCAGAAAA
CCCTTAATTATATGGGAATGGAAGTTGACGATCTCCTTATCGATTTGTCAGCTAGTATTGCTGATGTGGTGAATTCAAGT
GCAGTTTACATTCAAGAAGATGCTGTTCGACCACATATTCTCAAAGAGAGTGATGTTATTATTAGTGACCTACCTGTTGG
TTACTACCCTAATGATGAAATTGCGAGTCGTTTCAAGGTTGCAGCAACTGGTGAACACACCTATGCCCATCACCTTCTCA
TGGAGCAATCACTCAAGTACTTGAAGAAAGATGGTATTGCTATTCTTTTGGCACCAACTAATCTTTTGACAAGCCCACAA
AGTGATTTGCTTAAGAAATGGCTATCAGGCTATGCTGATATTATTGCCGTTATCACTCTTCCAGAAGCAGCTTTTGGCAA
TAAACATAACATGAAGTCTATCTTTGTGCTTAAAAAACAAACTGAAAATGCTCCTGAGACCTTTGTTTATCCACTTAGCG
ATTTGCAAAACCCAGAGGTCCTCAAAGATTTTACAGAGAATTTCCAAAAATGGAAATCAGATAATTCCATTTTCTAG

Domains

Predicted by InterproScan.

N-6 DNA Methylase (N6_Mtase)

(69-295)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYH Streptococcus mutans UA159

70.794

99.057

0.701
  comYH Streptococcus mutans UA140

70.794

99.057

0.701