Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   LU290_RS01780 Genome accession   NZ_CP089975
Coordinates   398046..399389 (+) Length   447 a.a.
NCBI ID   WP_277808863.1    Uniprot ID   -
Organism   Moraxella nasibovis strain ZY190618     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 393046..404389
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LU290_RS01755 (LU290_01755) - 394098..394361 (+) 264 WP_277808858.1 hypothetical protein -
  LU290_RS01760 (LU290_01760) pilM 394385..395899 (+) 1515 WP_277808859.1 pilus assembly protein PilM -
  LU290_RS01765 (LU290_01765) - 395896..396555 (+) 660 WP_277808860.1 PilN domain-containing protein -
  LU290_RS01770 (LU290_01770) - 396552..397217 (+) 666 WP_277808861.1 type 4a pilus biogenesis protein PilO -
  LU290_RS01775 (LU290_01775) - 397204..397833 (+) 630 WP_277808862.1 pilus assembly protein PilP -
  LU290_RS01780 (LU290_01780) pilQ 398046..399389 (+) 1344 WP_277808863.1 type IV pilus secretin PilQ Machinery gene
  LU290_RS01785 (LU290_01785) aroK 399529..400137 (+) 609 WP_277808864.1 shikimate kinase AroK -
  LU290_RS01790 (LU290_01790) aroB 400296..401414 (+) 1119 WP_277808865.1 3-dehydroquinate synthase -
  LU290_RS01795 (LU290_01795) - 401499..402416 (+) 918 WP_277808866.1 hypothetical protein -
  LU290_RS01800 (LU290_01800) - 402436..403059 (+) 624 WP_277808867.1 carbonic anhydrase -
  LU290_RS01805 (LU290_01805) gloA 403249..403782 (+) 534 WP_277808868.1 lactoylglutathione lyase -

Sequence

Protein


Download         Length: 447 a.a.        Molecular weight: 48757.78 Da        Isoelectric Point: 6.1840

>NTDB_id=639576 LU290_RS01780 WP_277808863.1 398046..399389(+) (pilQ) [Moraxella nasibovis strain ZY190618]
MKNINTWKVVLLFLALFMTRQGVAESDAKGYQGERISVAFQDMPVRTVLDVLAHAGGANIVATDGVTGNITLRLNHVPWD
QALDIVVDTKRLIKHEHQGVITISAADELAQLSLRQDQARRQSEQYLPLQTKYLRINYAEAKDILTLITHKGDGERAASI
LSERGTASLDSRTNTLIIKDIQPVIDEIMALTTRLDVPVQQVMIEARIVSANDGFSRDLGVSFGVLSNSEHLQIGGSHTT
LWDMRRSGNLANTITRPNNLSVNLGAANPAGRIAFGLINLPDVLLDLELSAMQADRRGEVISTPKVLTADKQTARISSGM
QIAYQEETSSGATNVVFKEAALVLEATPTITPDGKITLKLSVKNGTPVTNLGVIAIQEDSLETNVIVDDGQTVVLGGIYR
QTNNKGVTKVPFFGDLPVVGRLFRQENRTDNKEELLIFVTPKLVPMP

Nucleotide


Download         Length: 1344 bp        

>NTDB_id=639576 LU290_RS01780 WP_277808863.1 398046..399389(+) (pilQ) [Moraxella nasibovis strain ZY190618]
ATGAAAAATATCAATACATGGAAAGTTGTGCTGTTGTTTTTGGCGTTATTTATGACAAGGCAGGGTGTTGCTGAGTCTGA
CGCCAAAGGCTATCAAGGCGAGCGCATTTCGGTGGCGTTTCAAGACATGCCTGTGCGCACGGTTTTAGATGTGTTGGCGC
ACGCAGGCGGTGCCAACATCGTGGCAACGGATGGCGTGACGGGCAATATCACGCTTAGGCTAAATCATGTTCCATGGGAT
CAGGCGCTGGACATTGTCGTGGACACCAAGCGCCTGATCAAGCATGAGCATCAAGGCGTCATCACCATCTCAGCTGCTGA
CGAACTGGCACAATTAAGCCTGCGCCAAGATCAGGCACGCCGTCAGTCTGAACAATATCTGCCTTTGCAGACCAAATACC
TTCGCATCAATTATGCTGAGGCAAAAGACATCTTGACGCTCATCACGCACAAAGGCGATGGCGAGCGTGCCGCCAGCATT
CTTTCTGAGCGTGGTACAGCCAGCCTTGATTCTCGCACCAACACGCTCATCATCAAGGACATTCAGCCAGTCATTGATGA
GATCATGGCGCTCACCACTCGTCTGGATGTGCCTGTGCAGCAGGTGATGATCGAGGCTCGCATCGTCAGTGCCAATGATG
GATTTAGCCGTGATCTTGGCGTAAGCTTCGGCGTGCTGTCAAACAGCGAACACTTGCAGATCGGTGGTTCGCACACGACG
CTTTGGGACATGCGCCGCTCTGGCAATCTTGCCAATACCATCACACGCCCCAACAATTTATCAGTCAATCTGGGGGCGGC
AAATCCAGCAGGGCGCATCGCCTTTGGTCTTATCAATCTGCCTGATGTGCTGCTTGATTTGGAGCTGTCTGCCATGCAAG
CCGACCGCCGAGGCGAGGTGATTTCCACCCCAAAAGTGCTGACCGCCGACAAGCAAACCGCCCGCATCTCATCAGGCATG
CAGATCGCCTATCAAGAAGAGACATCCAGCGGTGCGACTAATGTGGTGTTCAAGGAGGCGGCGCTCGTGCTTGAAGCGAC
ACCAACCATCACCCCAGATGGCAAAATCACCCTAAAACTGTCGGTCAAAAATGGCACGCCAGTGACCAATCTGGGCGTGA
TTGCCATTCAAGAAGACTCGCTTGAAACTAATGTCATCGTCGATGATGGGCAGACGGTGGTGTTGGGTGGTATCTATCGA
CAGACCAACAATAAAGGCGTGACCAAAGTACCGTTTTTTGGGGATTTGCCAGTCGTTGGGCGCTTGTTTCGCCAAGAAAA
TCGCACCGATAATAAAGAAGAGCTGCTGATTTTTGTGACGCCAAAGCTTGTGCCGATGCCTTGA

Domains

Predicted by InterproScan.

Bacterial type II and III secretion system protein (Secretin)

(291-444)

Bacterial type II/III secretion system short domain (Secretin_N)

(133-201)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Acinetobacter baumannii strain A118

48.472

100

0.497
  pilQ Acinetobacter baumannii D1279779

48.472

100

0.497
  comQ Acinetobacter baylyi ADP1

48.198

99.329

0.479
  pilQ Legionella pneumophila strain ERS1305867

44.55

94.407

0.421
  pilQ Legionella pneumophila strain Lp02

44.418

94.183

0.418
  pilQ Vibrio cholerae strain A1552

43.765

95.078

0.416
  pilQ Vibrio cholerae O1 biovar El Tor strain E7946

43.765

95.078

0.416
  pilQ Pseudomonas aeruginosa PAK

40.492

100

0.405
  pilQ Vibrio campbellii strain DS40M4

41.379

97.315

0.403
  pilQ Neisseria meningitidis M1080

37.104

98.881

0.367
  pilQ Neisseria meningitidis MC58

37.104

98.881

0.367
  pilQ Neisseria gonorrhoeae strain FA1090

37.5

96.644

0.362