Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   YBT1518_RS12015 Genome accession   NC_022873
Coordinates   2333339..2333674 (+) Length   111 a.a.
NCBI ID   WP_023521799.1    Uniprot ID   A0A9W3KEH0
Organism   Bacillus thuringiensis YBT-1518     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2328339..2338674
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  YBT1518_RS11990 (YBT1518_11875) - 2328670..2329362 (-) 693 WP_023521796.1 hypothetical protein -
  YBT1518_RS11995 (YBT1518_11880) - 2329472..2330119 (+) 648 WP_000165961.1 HD domain-containing protein -
  YBT1518_RS12000 (YBT1518_11885) - 2330116..2332011 (+) 1896 WP_000783192.1 ABC-F family ATP-binding cassette domain-containing protein -
  YBT1518_RS12005 (YBT1518_11890) - 2332087..2332818 (+) 732 WP_023521797.1 Bax inhibitor-1/YccA family protein -
  YBT1518_RS12010 (YBT1518_11895) - 2332924..2333178 (+) 255 WP_023521798.1 DUF4318 domain-containing protein -
  YBT1518_RS12015 (YBT1518_11900) ssbA 2333339..2333674 (+) 336 WP_023521799.1 single-stranded DNA-binding protein Machinery gene
  YBT1518_RS12020 - 2334046..2335125 (+) 1080 WP_043924649.1 hypothetical protein -
  YBT1518_RS12025 (YBT1518_11910) - 2335632..2336759 (+) 1128 WP_023521801.1 conserved virulence factor C family protein -
  YBT1518_RS12030 (YBT1518_11915) - 2336763..2337146 (+) 384 WP_023521802.1 thiol-disulfide oxidoreductase DCC family protein -
  YBT1518_RS12035 (YBT1518_11920) - 2337229..2337663 (+) 435 WP_023521803.1 BrxA/BrxB family bacilliredoxin -
  YBT1518_RS12040 (YBT1518_11925) - 2337714..2338490 (+) 777 WP_023521804.1 class I SAM-dependent methyltransferase -

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 12701.48 Da        Isoelectric Point: 9.4344

>NTDB_id=63621 YBT1518_RS12015 WP_023521799.1 2333339..2333674(+) (ssbA) [Bacillus thuringiensis YBT-1518]
MMNRVVLIGRLTKEPELYYTKQGGAYARICVAVNRGFRNSLGEQQADFINCVVWRKSAENVTEYCKKGSLVGITGRIQTS
NYDDEQGKRIYRTEVVIESITFLERRREGAS

Nucleotide


Download         Length: 336 bp        

>NTDB_id=63621 YBT1518_RS12015 WP_023521799.1 2333339..2333674(+) (ssbA) [Bacillus thuringiensis YBT-1518]
ATGATGAATCGAGTTGTATTAATCGGTAGATTGACAAAGGAGCCAGAATTATACTACACAAAACAAGGCGGCGCTTATGC
ACGAATATGTGTTGCGGTGAATAGGGGATTTCGAAATAGTTTAGGTGAACAACAAGCCGATTTTATTAATTGTGTCGTTT
GGCGAAAATCGGCTGAGAATGTAACTGAATATTGTAAGAAGGGGTCACTTGTTGGGATTACAGGGCGTATTCAGACTAGT
AATTACGATGATGAACAAGGCAAGAGAATATATAGAACTGAAGTTGTGATTGAGAGTATTACCTTTTTGGAGAGAAGGCG
GGAGGGGGCATCGTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

59.434

95.495

0.568
  ssb Latilactobacillus sakei subsp. sakei 23K

56.604

95.495

0.541
  ssbB Bacillus subtilis subsp. subtilis str. 168

51.786

100

0.523
  ssbB Lactococcus lactis subsp. cremoris KW2

46.667

94.595

0.441
  ssbB Streptococcus sobrinus strain NIDR 6715-7

44.545

99.099

0.441
  ssbA Streptococcus mutans UA159

40.909

99.099

0.405
  ssbB/cilA Streptococcus mitis NCTC 12261

40.909

99.099

0.405
  ssbB/cilA Streptococcus pneumoniae TIGR4

40.909

99.099

0.405
  ssbB/cilA Streptococcus pneumoniae D39

40

99.099

0.396
  ssbB/cilA Streptococcus pneumoniae R6

40

99.099

0.396
  ssbB/cilA Streptococcus mitis SK321

40

99.099

0.396
  ssbB/cilA Streptococcus pneumoniae Rx1

40

99.099

0.396

Multiple sequence alignment