Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapC   Type   Regulator
Locus tag   LT232_RS11160 Genome accession   NZ_CP089287
Coordinates   2280836..2281984 (-) Length   382 a.a.
NCBI ID   WP_012116798.1    Uniprot ID   A3KLC9
Organism   Bacillus velezensis strain GSBZ09     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 2275836..2286984
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LT232_RS11130 (LT232_11130) - 2275974..2276732 (-) 759 WP_012116804.1 ABC transporter ATP-binding protein -
  LT232_RS11135 (LT232_11135) - 2276726..2277673 (-) 948 WP_007410274.1 iron chelate uptake ABC transporter family permease subunit -
  LT232_RS11140 (LT232_11140) ceuB 2277663..2278616 (-) 954 WP_059366593.1 ABC transporter permease Machinery gene
  LT232_RS11145 (LT232_11145) - 2279030..2280394 (+) 1365 WP_052827044.1 aspartate kinase -
  LT232_RS11150 (LT232_11150) - 2280474..2280584 (+) 111 WP_369878517.1 YjcZ family sporulation protein -
  LT232_RS11155 (LT232_11155) phrC 2280733..2280852 (-) 120 WP_003156334.1 PhrC/PhrF family phosphatase-inhibitory pheromone Regulator
  LT232_RS11160 (LT232_11160) rapC 2280836..2281984 (-) 1149 WP_012116798.1 Rap family tetratricopeptide repeat protein Regulator
  LT232_RS11165 (LT232_11165) - 2282137..2283570 (-) 1434 WP_162492834.1 sensor histidine kinase -
  LT232_RS11170 (LT232_11170) - 2283557..2284240 (-) 684 WP_007410267.1 response regulator transcription factor -
  LT232_RS11175 (LT232_11175) - 2284453..2285889 (+) 1437 WP_076425710.1 ABC transporter permease -
  LT232_RS11180 (LT232_11180) - 2285904..2286587 (+) 684 WP_100001209.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 382 a.a.        Molecular weight: 45490.68 Da        Isoelectric Point: 4.9916

>NTDB_id=636166 LT232_RS11160 WP_012116798.1 2280836..2281984(-) (rapC) [Bacillus velezensis strain GSBZ09]
MKSGLIPSSAVGQKINEWYRYIRTFSVPDAEILKAEIKQELDHMEPDSNLVLYYSLMEFRHQLMLDYLEPLEKLKIEDQP
TLSEILDNIDNSQAGLKGLLDYYVNFFKGMFEFDKREFISAITYYKQAEKKLAFVSDHVERAEFYFKVAEAYYHMKQTYF
SLIHIKNAYEIYVEQDTYNVRIIQCHFVFGVNLMDERRFEQAAKHFQHALQMAEKEQKAQLVGRAQYNLGLCYYNQDRIG
EAIPYFERAVDTFESQRIVNSLPQAYFLITLIYFKLGKKEKASEYHKRGYEYAKETDDPVYTVKFEWLQALYQAKPDEET
ISACFRYLEDKNLYADIEDLALEAAKYYYEQNCFKISSDYFLKVEEARKQIQRSEGLYEIEI

Nucleotide


Download         Length: 1149 bp        

>NTDB_id=636166 LT232_RS11160 WP_012116798.1 2280836..2281984(-) (rapC) [Bacillus velezensis strain GSBZ09]
ATGAAGAGCGGGTTAATTCCTTCTTCAGCAGTCGGGCAGAAAATTAACGAGTGGTATCGATACATCAGAACATTCAGCGT
GCCGGATGCGGAGATCTTGAAGGCCGAGATCAAACAAGAGCTTGACCATATGGAGCCTGATTCGAACTTAGTGCTTTATT
ATTCCCTCATGGAATTTCGCCATCAGCTGATGCTGGATTACTTGGAGCCGCTGGAAAAACTGAAGATAGAAGACCAGCCG
ACCCTGTCGGAAATTCTTGATAACATTGATAACAGCCAGGCCGGCCTCAAAGGGCTTCTCGATTATTACGTCAACTTTTT
CAAAGGCATGTTTGAATTTGATAAAAGAGAATTTATCTCAGCGATTACATATTATAAACAAGCTGAGAAAAAACTGGCCT
TCGTATCGGACCACGTGGAACGGGCGGAGTTTTATTTTAAAGTGGCCGAAGCTTATTATCATATGAAACAAACGTATTTT
TCTTTGATACATATAAAAAACGCTTATGAAATTTACGTAGAGCAGGACACATATAACGTCCGGATCATTCAATGCCATTT
TGTATTCGGCGTCAATTTAATGGATGAAAGGCGCTTTGAACAGGCGGCCAAACATTTTCAGCACGCTCTGCAAATGGCCG
AAAAAGAACAAAAAGCGCAGCTTGTCGGGAGGGCGCAGTATAACCTCGGACTGTGCTACTACAATCAGGACCGCATCGGC
GAAGCGATTCCGTACTTTGAACGGGCGGTCGATACATTTGAATCACAAAGAATCGTCAATTCTCTTCCTCAAGCATATTT
TCTAATCACACTCATTTACTTTAAACTCGGAAAAAAAGAAAAAGCGTCGGAATATCACAAGCGGGGATATGAATATGCTA
AAGAAACAGACGATCCCGTTTACACGGTAAAATTCGAATGGCTGCAGGCTCTGTATCAGGCGAAACCGGATGAGGAAACA
ATCAGCGCGTGTTTCCGTTACCTGGAAGATAAAAATTTATACGCCGATATAGAGGATTTAGCACTAGAAGCAGCTAAATA
TTACTATGAACAAAATTGCTTTAAAATTTCTTCTGACTATTTTCTGAAAGTCGAAGAGGCAAGGAAACAAATACAAAGGA
GTGAGGGTTTGTATGAAATTGAAATCTAA

Domains

Predicted by InterproScan.

Tetratricopeptide repeat (TPR_12)

(223-294)

response regulator aspartate phosphatase H, N terminal (RapH_N)

(6-66)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A3KLC9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapC Bacillus subtilis subsp. subtilis str. 168

82.461

100

0.825
  rapF Bacillus subtilis subsp. subtilis str. 168

56.842

99.476

0.565