Detailed information    

insolico Bioinformatically predicted

Overview

Name   nin/comJ   Type   Regulator
Locus tag   LT232_RS11380 Genome accession   NZ_CP089287
Coordinates   2344077..2344475 (+) Length   132 a.a.
NCBI ID   WP_007609299.1    Uniprot ID   -
Organism   Bacillus velezensis strain GSBZ09     
Function   represses the expression of nucA (predicted from homology)   
Competence regulation

Genomic Context

Location: 2339077..2349475
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LT232_RS11360 (LT232_11360) - 2341477..2341839 (-) 363 WP_007409352.1 winged helix-turn-helix transcriptional regulator -
  LT232_RS11365 (LT232_11365) hxlA 2342071..2342706 (+) 636 WP_015239130.1 3-hexulose-6-phosphate synthase -
  LT232_RS11370 (LT232_11370) hxlB 2342703..2343260 (+) 558 WP_007409354.1 6-phospho-3-hexuloisomerase -
  LT232_RS11375 (LT232_11375) nucA/comI 2343619..2344056 (+) 438 WP_003156588.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  LT232_RS11380 (LT232_11380) nin/comJ 2344077..2344475 (+) 399 WP_007609299.1 competence protein ComJ Regulator
  LT232_RS11385 (LT232_11385) - 2344516..2345952 (-) 1437 WP_076425807.1 glycoside hydrolase family 1 protein -
  LT232_RS11390 (LT232_11390) - 2346056..2346334 (-) 279 WP_263612330.1 YckD family protein -
  LT232_RS11395 (LT232_11395) - 2346452..2346886 (-) 435 WP_094031491.1 RDD family protein -
  LT232_RS11400 (LT232_11400) - 2346901..2348037 (-) 1137 WP_094031490.1 zinc-dependent alcohol dehydrogenase -
  LT232_RS11405 (LT232_11405) - 2348102..2349304 (-) 1203 WP_069007411.1 GTP-binding protein -

Sequence

Protein


Download         Length: 132 a.a.        Molecular weight: 14977.03 Da        Isoelectric Point: 4.9712

>NTDB_id=636168 LT232_RS11380 WP_007609299.1 2344077..2344475(+) (nin/comJ) [Bacillus velezensis strain GSBZ09]
MIKSWKPQELAISYHQFTIFQKDSEPPVIDWTDEAIEKGYAEADGAVSFEARRNTRAFIVLRLNTSEPVPSYEKKATVPF
EAVKDGIEIESVMSKRLFFHIPKGRYSLTCYSVPAEISDLHADTYIIDAAAM

Nucleotide


Download         Length: 399 bp        

>NTDB_id=636168 LT232_RS11380 WP_007609299.1 2344077..2344475(+) (nin/comJ) [Bacillus velezensis strain GSBZ09]
TTGATTAAATCATGGAAACCGCAAGAACTGGCCATTTCTTATCATCAATTTACAATCTTCCAAAAAGATTCAGAACCGCC
TGTTATCGATTGGACCGATGAAGCCATTGAAAAAGGATATGCGGAAGCTGACGGAGCTGTTTCATTTGAGGCAAGGAGAA
ATACGAGGGCATTTATCGTTCTCAGGCTTAACACAAGTGAACCGGTACCATCCTATGAGAAAAAAGCGACTGTTCCCTTT
GAGGCTGTAAAAGATGGAATTGAGATTGAAAGCGTGATGTCCAAGCGGCTTTTCTTTCATATTCCGAAAGGCCGATACAG
CCTTACCTGTTATTCAGTGCCTGCCGAAATATCCGATCTTCATGCGGATACGTATATTATTGATGCAGCCGCAATGTAA

Domains

Predicted by InterproScan.

Competence protein J (ComJ) (ComJ)

(9-129)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nin/comJ Bacillus subtilis subsp. subtilis str. 168

75.758

100

0.758