Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   LTQ54_RS08590 Genome accession   NZ_CP089203
Coordinates   1885030..1886142 (-) Length   370 a.a.
NCBI ID   WP_017077324.1    Uniprot ID   -
Organism   Vibrio splendidus strain 2_C04b     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1880030..1891142
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LTQ54_RS08560 (LTQ54_08560) hemF 1880569..1881486 (-) 918 WP_243578694.1 oxygen-dependent coproporphyrinogen oxidase -
  LTQ54_RS08565 (LTQ54_08565) - 1881506..1882063 (-) 558 WP_102453153.1 L-threonylcarbamoyladenylate synthase -
  LTQ54_RS08570 (LTQ54_08570) purE 1882259..1882744 (+) 486 WP_243578695.1 5-(carboxyamino)imidazole ribonucleotide mutase -
  LTQ54_RS08575 (LTQ54_08575) - 1882750..1883880 (+) 1131 WP_243578696.1 5-(carboxyamino)imidazole ribonucleotide synthase -
  LTQ54_RS08580 (LTQ54_08580) - 1883968..1884537 (-) 570 WP_017080840.1 topoisomerase DNA-binding C4 zinc finger domain-containing protein -
  LTQ54_RS08585 (LTQ54_08585) - 1884550..1885026 (-) 477 WP_004735774.1 DUF494 family protein -
  LTQ54_RS08590 (LTQ54_08590) dprA 1885030..1886142 (-) 1113 WP_017077324.1 DNA-processing protein DprA Machinery gene
  LTQ54_RS08595 (LTQ54_08595) - 1886139..1887230 (-) 1092 WP_108086950.1 LysM peptidoglycan-binding domain-containing protein -
  LTQ54_RS08600 (LTQ54_08600) def 1887371..1887883 (+) 513 WP_004735769.1 peptide deformylase -
  LTQ54_RS08605 (LTQ54_08605) fmt 1887922..1888887 (+) 966 WP_102537621.1 methionyl-tRNA formyltransferase -
  LTQ54_RS08610 (LTQ54_08610) rsmB 1889007..1890287 (+) 1281 WP_243579594.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -

Sequence

Protein


Download         Length: 370 a.a.        Molecular weight: 40109.89 Da        Isoelectric Point: 6.8795

>NTDB_id=635695 LTQ54_RS08590 WP_017077324.1 1885030..1886142(-) (dprA) [Vibrio splendidus strain 2_C04b]
MNEQQLSAWLTLSFVPQLGGKRLSRLLSIDSPLNIVGYSSQQLQALGLSAKQIAYLREQAPREVEACLEWQARQPNHHII
TPNCSHYPKLLNETASAPSVLFVKGHVEKLIEPQIAMVGSRNASLEGLQTAKSFAKEFVQNGLIVTSGLALGIDGYAHDG
ALDKGGETFAVLGSGLDSIYPARHRNLADRICENGALISEFRPSAKPRPEHFPRRNRIISGLSLGTLVVEAAEKSGSLIT
ARYAMEQGREVFALPGSIHNPTSRGGNSLIKAGACLVQSAQDVLIEIKSLLDWSIDQQPSLFEPTPSMGENEQLPFPQLL
ANVGLEATPVDILAQRTHIPVHEVMMQLLELELSGHVVAVSGGYIRKGRG

Nucleotide


Download         Length: 1113 bp        

>NTDB_id=635695 LTQ54_RS08590 WP_017077324.1 1885030..1886142(-) (dprA) [Vibrio splendidus strain 2_C04b]
GTGAATGAGCAACAACTGAGTGCTTGGTTAACTCTAAGTTTTGTTCCGCAATTGGGTGGCAAGCGCCTTTCTCGACTGCT
GAGTATTGATTCCCCTTTGAATATTGTTGGTTACTCAAGTCAGCAACTGCAAGCGCTTGGTTTGTCTGCCAAGCAAATTG
CCTATCTAAGAGAGCAAGCCCCAAGAGAAGTGGAGGCTTGCCTAGAGTGGCAAGCAAGACAACCCAACCATCACATCATT
ACCCCGAATTGCTCGCATTATCCCAAACTGCTGAATGAGACCGCCTCCGCGCCAAGCGTGCTTTTCGTTAAAGGTCACGT
TGAAAAACTGATTGAGCCTCAAATCGCTATGGTCGGAAGTCGTAATGCCAGTCTCGAAGGGTTGCAAACCGCGAAGTCCT
TCGCCAAAGAGTTCGTCCAAAACGGTTTGATTGTCACCAGTGGCTTAGCGCTCGGTATCGATGGCTATGCTCATGATGGT
GCTCTAGATAAAGGAGGGGAAACTTTTGCTGTATTGGGTTCTGGATTGGATTCCATTTATCCTGCGCGACACAGAAATTT
AGCCGATAGGATCTGTGAAAATGGTGCGTTGATTTCAGAGTTTCGCCCAAGTGCCAAACCACGACCTGAACATTTCCCTC
GCCGTAACCGTATTATAAGTGGGTTATCGCTCGGAACCTTGGTGGTTGAAGCGGCTGAGAAGAGTGGTTCTTTGATTACA
GCTCGCTATGCCATGGAGCAAGGCCGAGAGGTGTTTGCGCTTCCTGGCTCTATTCATAACCCAACCAGTCGAGGAGGTAA
TAGCTTAATCAAAGCTGGAGCATGCTTGGTACAGAGTGCACAAGATGTTCTGATTGAAATAAAGAGTCTGTTAGACTGGT
CTATCGATCAGCAACCCAGCTTGTTCGAACCTACGCCCAGTATGGGGGAAAATGAACAATTGCCATTTCCACAGCTGTTA
GCTAACGTAGGGTTAGAGGCGACACCCGTTGATATTTTGGCACAGAGAACCCATATACCTGTGCATGAGGTCATGATGCA
GCTTTTAGAGCTTGAGCTCTCAGGGCATGTTGTTGCAGTTTCCGGTGGCTATATTCGAAAGGGGAGAGGCTAA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(74-278)

DprA winged helix domain (DprA_WH)

(317-363)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Vibrio campbellii strain DS40M4

67.751

99.73

0.676
  dprA Vibrio cholerae strain A1552

58.556

100

0.592
  dprA Glaesserella parasuis strain SC1401

47.581

100

0.478
  dprA Legionella pneumophila strain ERS1305867

43.681

98.378

0.43
  dprA Neisseria meningitidis MC58

39.043

100

0.419
  dprA Neisseria meningitidis strain C311

39.043

100

0.419
  dprA Neisseria gonorrhoeae MS11

37.975

100

0.405
  dprA Neisseria gonorrhoeae strain FA1090

37.975

100

0.405
  dprA Haemophilus influenzae Rd KW20

44.51

91.081

0.405
  dprA Acinetobacter baumannii D1279779

42.727

89.189

0.381
  dprA Acinetobacter baumannii strain A118

41.718

88.108

0.368
  dprA Acinetobacter baylyi ADP1

40

90.541

0.362