Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   LTQ03_RS08290 Genome accession   NZ_CP089201
Coordinates   1840250..1841968 (+) Length   572 a.a.
NCBI ID   WP_243583170.1    Uniprot ID   -
Organism   Vibrio splendidus strain 1_C04a     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1835250..1846968
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LTQ03_RS08270 (LTQ03_08270) pilM 1837479..1838504 (+) 1026 WP_004729669.1 type IV pilus assembly protein PilM Machinery gene
  LTQ03_RS08275 (LTQ03_08275) pilN 1838488..1839087 (+) 600 WP_102481610.1 PilN domain-containing protein Machinery gene
  LTQ03_RS08280 (LTQ03_08280) pilO 1839080..1839709 (+) 630 WP_004729667.1 type 4a pilus biogenesis protein PilO Machinery gene
  LTQ03_RS08285 (LTQ03_08285) pilP 1839696..1840214 (+) 519 WP_004729666.1 pilus assembly protein PilP Machinery gene
  LTQ03_RS08290 (LTQ03_08290) pilQ 1840250..1841968 (+) 1719 WP_243583170.1 type IV pilus secretin PilQ family protein Machinery gene
  LTQ03_RS08295 (LTQ03_08295) aroK 1842145..1842663 (+) 519 WP_004729664.1 shikimate kinase AroK -
  LTQ03_RS08300 (LTQ03_08300) aroB 1842689..1843777 (+) 1089 WP_004729663.1 3-dehydroquinate synthase -
  LTQ03_RS08305 (LTQ03_08305) - 1843857..1845374 (+) 1518 WP_243583171.1 AAA family ATPase -
  LTQ03_RS08310 (LTQ03_08310) - 1845444..1846292 (+) 849 WP_004729661.1 Dam family site-specific DNA-(adenine-N6)-methyltransferase -

Sequence

Protein


Download         Length: 572 a.a.        Molecular weight: 62012.79 Da        Isoelectric Point: 4.4494

>NTDB_id=635658 LTQ03_RS08290 WP_243583170.1 1840250..1841968(+) (pilQ) [Vibrio splendidus strain 1_C04a]
MIKGISGLVSKALQGFAVSVMLVFSVLSHAESLPNQLENIDFRVNKDKDAVIIIELATSTAVVDVQRAQEGLSIELLNTQ
VNDDKLYLLDVKDFATLVEGIEVYKETPSTRLLATIAGDYQYEYNLKGRFIEVVISKPVINEATKEKSVLEKEGKLISIN
FQDIPVRNVLQLIADYNDFNLVVSDSVAGNLTLRLDGVPWQQVLDIILQVKGLDKRVDGNVILVAPKAELDLREQQALEK
SRLEEELGELKSEIIKINFAKATDIADMIGGEGAVSMLSDRGSITIDERTNSLLIRELEENIAVIRGIIESLDIPVKQVQ
IEARIVTVTEGNLDELGVRWGVSSTNGSFKVGGSIEGNHPSQITPYDDNGGNSAIDDFLNVNLGAASPNASSIAFQVAKL
GSDTLLDLELSALQQESKAEIISSPRLITTNKKPAYIEQGTEIPYLESSSSGATSVAFKKAVLSLKVTPQITPDNRLVLD
LSVTQDRPGQVVKTGTGEAVAIDTQRIGTQVLVNNGETVVLGGIFQHSVSSTVDKVPLLGDLPVLGALFRRSYENVGKSE
LLIFVTPKVVIQ

Nucleotide


Download         Length: 1719 bp        

>NTDB_id=635658 LTQ03_RS08290 WP_243583170.1 1840250..1841968(+) (pilQ) [Vibrio splendidus strain 1_C04a]
ATGATTAAAGGAATAAGTGGATTAGTGAGCAAGGCTCTACAAGGTTTTGCTGTGTCTGTGATGTTGGTCTTTAGTGTGCT
CAGTCACGCCGAAAGCTTACCTAATCAATTGGAGAATATTGATTTTAGGGTAAACAAAGATAAAGACGCCGTCATTATTA
TTGAGCTGGCAACCAGCACCGCTGTGGTGGATGTTCAACGTGCTCAGGAAGGGTTAAGTATCGAATTACTCAATACTCAA
GTTAATGACGATAAGCTTTATCTTTTGGATGTGAAGGATTTCGCGACCCTAGTGGAAGGTATTGAAGTCTATAAAGAGAC
GCCCAGCACACGACTGTTGGCGACGATCGCTGGTGACTATCAGTATGAATATAACCTAAAAGGTCGTTTCATAGAGGTGG
TGATCAGCAAGCCTGTTATCAATGAAGCGACCAAAGAGAAAAGCGTTTTAGAAAAAGAGGGCAAACTGATATCGATTAAC
TTCCAAGATATCCCGGTACGAAATGTCCTGCAGCTGATTGCTGACTACAACGATTTCAATCTCGTCGTGTCTGACTCGGT
AGCTGGTAACCTAACTTTACGTTTAGATGGCGTACCTTGGCAGCAAGTTCTCGACATTATCTTGCAAGTTAAAGGACTAG
ATAAGCGCGTTGATGGCAATGTTATTTTGGTGGCGCCAAAAGCAGAACTCGATCTTCGAGAGCAACAAGCGTTAGAGAAA
TCTCGCTTAGAAGAGGAGTTAGGGGAGCTTAAGTCGGAAATCATCAAGATTAATTTTGCTAAAGCCACCGACATTGCCGA
CATGATTGGCGGTGAAGGTGCGGTGAGCATGTTGTCCGATCGTGGCTCGATCACCATTGATGAACGCACCAATTCTCTAT
TGATTCGTGAACTGGAAGAAAACATTGCCGTGATACGAGGCATCATTGAATCTTTGGACATCCCCGTGAAGCAAGTCCAG
ATAGAGGCGCGCATCGTAACCGTTACCGAGGGTAACCTTGATGAGTTAGGGGTGCGTTGGGGTGTTTCTTCCACCAACGG
TAGCTTTAAAGTTGGCGGCTCGATAGAGGGCAACCACCCATCGCAAATTACGCCGTATGACGATAATGGTGGGAACAGTG
CGATTGACGATTTCCTCAACGTTAATCTAGGGGCGGCATCTCCTAATGCATCAAGCATTGCGTTTCAGGTGGCTAAACTG
GGTTCAGATACCTTGCTTGATCTTGAATTGTCGGCACTACAACAAGAGTCAAAAGCTGAGATTATTTCCAGCCCACGTTT
AATCACCACCAATAAAAAACCCGCTTATATTGAGCAAGGTACTGAAATTCCTTATTTAGAGTCGTCTTCAAGTGGTGCTA
CTTCGGTCGCATTTAAGAAAGCAGTGTTGAGTCTTAAGGTGACACCACAAATCACGCCCGACAATCGTTTGGTATTGGAT
TTAAGCGTGACCCAAGATAGGCCAGGGCAAGTAGTGAAAACGGGAACGGGTGAGGCTGTTGCCATTGATACTCAACGCAT
AGGGACGCAAGTGCTTGTTAATAATGGTGAAACAGTCGTACTTGGCGGGATATTTCAGCACAGTGTGAGCAGTACAGTGG
ACAAAGTTCCTCTGTTAGGAGACCTGCCAGTTTTGGGTGCATTATTCCGTCGTAGCTATGAAAATGTGGGTAAAAGTGAA
CTACTTATTTTTGTTACACCCAAAGTTGTGATTCAGTAA

Domains

Predicted by InterproScan.

Bacterial type II and III secretion system protein (Secretin)

(412-570)

Bacterial type II/III secretion system short domain (Secretin_N)

(253-318)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Vibrio cholerae O1 biovar El Tor strain E7946

77.875

100

0.781
  pilQ Vibrio cholerae strain A1552

77.875

100

0.781
  pilQ Vibrio campbellii strain DS40M4

80.699

95.105

0.767
  pilQ Legionella pneumophila strain ERS1305867

43.066

95.804

0.413
  pilQ Legionella pneumophila strain Lp02

43.04

95.455

0.411
  pilQ Pseudomonas aeruginosa PAK

40.787

97.727

0.399
  comQ Acinetobacter baylyi ADP1

39.223

98.951

0.388
  pilQ Acinetobacter baumannii D1279779

37.824

100

0.383
  pilQ Acinetobacter baumannii strain A118

37.824

100

0.383