Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   PALA11_RS26640 Genome accession   NZ_CP106680
Coordinates   5742416..5743012 (-) Length   198 a.a.
NCBI ID   WP_003095839.1    Uniprot ID   G3XD30
Organism   Pseudomonas aeruginosa strain PALA11     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5737416..5748012
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PALA11_RS26620 (PALA11_05283) aroK 5738547..5739065 (-) 519 WP_003095833.1 shikimate kinase AroK -
  PALA11_RS26625 (PALA11_05284) pilQ 5739077..5741221 (-) 2145 WP_023089701.1 type 4a pilus secretin PilQ Machinery gene
  PALA11_RS26630 (PALA11_05285) comL/pilP 5741275..5741799 (-) 525 WP_003095836.1 type 4a pilus biogenesis lipoprotein PilP Machinery gene
  PALA11_RS26635 (PALA11_05286) pilO 5741796..5742419 (-) 624 WP_003103268.1 type 4a pilus biogenesis protein PilO Machinery gene
  PALA11_RS26640 (PALA11_05287) pilN 5742416..5743012 (-) 597 WP_003095839.1 type 4a pilus biogenesis protein PilN Machinery gene
  PALA11_RS26645 (PALA11_05288) pilM 5743012..5744076 (-) 1065 WP_128566705.1 type IV pilus assembly protein PilM Machinery gene
  PALA11_RS26650 (PALA11_05289) - 5744261..5746732 (+) 2472 WP_003125627.1 penicillin-binding protein 1A -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22213.55 Da        Isoelectric Point: 10.0895

>NTDB_id=635656 PALA11_RS26640 WP_003095839.1 5742416..5743012(-) (pilN) [Pseudomonas aeruginosa strain PALA11]
MARINLLPWREELREQRKQQFLVILGGVLVASAALVFLGDQYFTAAIENQNARNDFLRKEIVVLDARIKEISELKSRRQQ
LLERMKIIQDLQGNRPIIGRVFDQLVRTLPDGVYFTDLKMTGKNIAIAGAAESNNRVSNLMRNMDASEWLTAPTLNEVKA
VTQGAVDQANVFQLTVQQTQPGEEDAKAKHGVAQGAKK

Nucleotide


Download         Length: 597 bp        

>NTDB_id=635656 PALA11_RS26640 WP_003095839.1 5742416..5743012(-) (pilN) [Pseudomonas aeruginosa strain PALA11]
ATGGCACGGATCAACCTTCTACCCTGGCGCGAAGAGCTGCGCGAGCAGCGCAAGCAGCAGTTCCTGGTGATTCTTGGCGG
CGTCCTGGTGGCATCGGCTGCGCTGGTATTCCTTGGCGACCAGTACTTCACCGCGGCCATCGAGAACCAGAACGCCCGCA
ACGACTTCCTGCGCAAGGAAATCGTCGTACTCGACGCGCGGATCAAGGAAATCAGCGAACTGAAGTCGCGGCGCCAGCAA
TTGCTCGAGCGGATGAAGATCATCCAGGACCTGCAGGGCAACCGTCCCATCATCGGACGGGTGTTCGACCAGCTCGTGCG
GACCTTGCCCGACGGCGTGTATTTCACCGACCTGAAAATGACCGGCAAGAACATCGCCATCGCCGGCGCGGCCGAGTCCA
ACAACCGCGTTTCCAATCTCATGCGCAACATGGACGCGTCCGAGTGGCTGACCGCCCCGACCCTGAACGAGGTCAAGGCG
GTGACCCAGGGCGCGGTGGACCAGGCCAACGTGTTCCAACTGACCGTGCAGCAGACGCAGCCCGGCGAGGAAGACGCCAA
GGCGAAGCATGGGGTTGCGCAAGGAGCCAAGAAATGA

Domains

Predicted by InterProScan.

Fimbrial assembly protein (PilN) (PilN)

(100-177)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 5EOU

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Legionella pneumophila strain ERS1305867

41.714

88.384

0.369