Detailed information NTG0635653

Bioinformatically predicted

Overview

• Name: cytR
• Type: Regulator
• Locus tag: LTQ03_RS08160
• Genome accession: NZ_CP089201
• Coordinates: 1808288..1809292 (-)
• Length: 334 a.a.
• NCBI ID: WP_017083807.1
• Uniprot ID: -
• Organism: Vibrio splendidus strain 1_C04a
• Function: promote competence gene expression (predicted from homology) Competence regulation

Genomic Context

Location: 1803288..1814292

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LTQ03_RS08130 (LTQ03_08130)	zapB	1803443..1803685 (+)	243	WP_004729696.1	cell division protein ZapB	-
LTQ03_RS08135 (LTQ03_08135)	rraA	1803797..1804315 (-)	519	WP_102571430.1	ribonuclease E activity regulator RraA	-
LTQ03_RS08140 (LTQ03_08140)	-	1804389..1805306 (-)	918	WP_243583157.1	1,4-dihydroxy-2-naphthoate polyprenyltransferase	-
LTQ03_RS08145 (LTQ03_08145)	hslU	1805462..1806802 (-)	1341	WP_017077598.1	HslU--HslV peptidase ATPase subunit	-
LTQ03_RS08150 (LTQ03_08150)	hslV	1806861..1807409 (-)	549	WP_004729692.1	ATP-dependent protease subunit HslV	-
LTQ03_RS08155 (LTQ03_08155)	ftsN	1807632..1808165 (-)	534	WP_004729691.1	cell division protein FtsN	-
LTQ03_RS08160 (LTQ03_08160)	cytR	1808288..1809292 (-)	1005	WP_017083807.1	DNA-binding transcriptional regulator CytR	Regulator
LTQ03_RS08165 (LTQ03_08165)	priA	1809533..1811734 (-)	2202	WP_243583160.1	primosomal protein N'	-
LTQ03_RS08170 (LTQ03_08170)	rpmE	1812067..1812285 (+)	219	WP_004729688.1	50S ribosomal protein L31	-
LTQ03_RS08175 (LTQ03_08175)	-	1812617..1813906 (+)	1290	WP_102433314.1	malic enzyme-like NAD(P)-binding protein	-

Sequence

Protein

• Length: 334 a.a.
• Molecular weight: 36587.11 Da
• Isoelectric Point: 6.4911

>NTDB_id=635653 LTQ03_RS08160 WP_017083807.1 1808288..1809292(-) (cytR) [Vibrio splendidus strain 1_C04a]
MATMKDVAQLAGVSTATVSRALMNPEKVSVSTRKRVETAVLEAGYSPNTLARNLRRNESKTIITIVPDICDPYFAEIIRG
IEDAAVENDYLVLLGDSGQQKKRESSFVNLVFTKQADGMLLLGTDHPFDVSKPEQKNLPPMVMACEFAPELELPTVHIDN
LTSAFEAVNYLAQLGHKRIAQISGPTTATLCKFRQQGYQQALRRAGVSMNPAYSTVGDFTFEAGAQAVRQLLALPEQPTA
IFCHNDAMAIGAIQETKKLGLRVPQDLSIVGFDDIQFAQYCDPPLTTISQPRYEIGRQAMLMMLDLLKGNDVQAGSRLLE
AKLVVRGSTAPPRM

Nucleotide

• Length: 1005 bp

>NTDB_id=635653 LTQ03_RS08160 WP_017083807.1 1808288..1809292(-) (cytR) [Vibrio splendidus strain 1_C04a]
ATGGCGACAATGAAGGATGTTGCCCAGCTAGCAGGCGTCTCAACGGCAACGGTATCACGTGCATTGATGAACCCTGAAAA
AGTCTCGGTTTCTACTCGTAAACGAGTTGAGACAGCAGTACTTGAAGCTGGATACTCACCCAATACATTAGCTAGAAATT
TACGTCGCAACGAATCAAAAACCATCATCACTATCGTTCCTGATATCTGTGACCCTTACTTCGCCGAAATCATTCGTGGT
ATCGAAGATGCCGCTGTAGAGAATGACTACCTCGTTCTACTGGGTGACAGTGGTCAACAAAAGAAGCGTGAGTCTTCATT
TGTTAACTTGGTCTTCACAAAGCAAGCAGACGGTATGCTACTGCTTGGCACTGACCATCCGTTTGATGTCAGTAAGCCTG
AGCAAAAGAATTTACCGCCAATGGTTATGGCGTGTGAATTCGCACCTGAGCTTGAACTGCCAACGGTTCACATCGACAAC
CTAACCTCTGCATTTGAAGCCGTGAATTACCTCGCTCAGTTAGGTCATAAGCGCATCGCTCAGATCTCTGGGCCAACGAC
TGCAACCCTGTGTAAGTTCCGTCAACAAGGCTACCAACAAGCATTGCGCCGCGCTGGAGTATCAATGAACCCAGCTTACA
GCACTGTGGGCGATTTCACCTTTGAAGCGGGTGCGCAAGCGGTTCGTCAATTACTAGCACTTCCTGAACAACCTACAGCG
ATCTTCTGTCATAACGATGCGATGGCGATTGGTGCGATTCAAGAAACGAAGAAGCTAGGTTTACGCGTTCCTCAAGACCT
ATCTATTGTTGGCTTCGATGACATCCAATTCGCTCAATACTGCGATCCACCGCTAACCACTATTTCTCAGCCTCGCTATG
AGATTGGACGCCAAGCGATGTTGATGATGCTTGATCTATTGAAGGGCAACGATGTGCAAGCAGGTTCGCGTCTACTTGAA
GCTAAATTAGTCGTTAGAGGCAGCACCGCACCACCTCGAATGTAA

Domains

Predicted by InterproScan.

• Bacterial regulatory proteins, lacI family (LacI) (3-48)

• Periplasmic binding protein-like domain (Peripla_BP_3) (168-329)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
cytR	Vibrio cholerae C6706	89.458	99.401	0.889
cytR	Vibrio parahaemolyticus RIMD 2210633	87.688	99.701	0.874