Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   LTQ03_RS08275 Genome accession   NZ_CP089201
Coordinates   1838488..1839087 (+) Length   199 a.a.
NCBI ID   WP_102481610.1    Uniprot ID   A0A7W4GL81
Organism   Vibrio splendidus strain 1_C04a     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1833488..1844087
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LTQ03_RS08255 (LTQ03_08255) - 1833598..1833777 (-) 180 WP_017080197.1 hypothetical protein -
  LTQ03_RS08260 (LTQ03_08260) oxyR 1833776..1834669 (+) 894 WP_243583167.1 DNA-binding transcriptional regulator OxyR -
  LTQ03_RS08265 (LTQ03_08265) - 1834766..1837327 (-) 2562 WP_243583168.1 PBP1A family penicillin-binding protein -
  LTQ03_RS08270 (LTQ03_08270) pilM 1837479..1838504 (+) 1026 WP_004729669.1 type IV pilus assembly protein PilM Machinery gene
  LTQ03_RS08275 (LTQ03_08275) pilN 1838488..1839087 (+) 600 WP_102481610.1 PilN domain-containing protein Machinery gene
  LTQ03_RS08280 (LTQ03_08280) pilO 1839080..1839709 (+) 630 WP_004729667.1 type 4a pilus biogenesis protein PilO Machinery gene
  LTQ03_RS08285 (LTQ03_08285) pilP 1839696..1840214 (+) 519 WP_004729666.1 pilus assembly protein PilP Machinery gene
  LTQ03_RS08290 (LTQ03_08290) pilQ 1840250..1841968 (+) 1719 WP_243583170.1 type IV pilus secretin PilQ family protein Machinery gene
  LTQ03_RS08295 (LTQ03_08295) aroK 1842145..1842663 (+) 519 WP_004729664.1 shikimate kinase AroK -
  LTQ03_RS08300 (LTQ03_08300) aroB 1842689..1843777 (+) 1089 WP_004729663.1 3-dehydroquinate synthase -

Sequence

Protein


Download         Length: 199 a.a.        Molecular weight: 22957.45 Da        Isoelectric Point: 9.8078

>NTDB_id=635655 LTQ03_RS08275 WP_102481610.1 1838488..1839087(+) (pilN) [Vibrio splendidus strain 1_C04a]
MLHQINLLPWRDEIRAQHKKRFIHLIILGVIIALAGQWAVGHYFYDQQAKQQARLSYLNRYIAEIDRQIQSLKVAEQEHK
AILTRLDVVESLQLGRNKTTDFMNLMPELIPEGVYVDKIKMNGQEIEMSGISDSTARLATMLDNLERSDSLKGVEMHSIV
HNRKRFNKEFQTFKVSFVFSPVSLESTTASRKEKGAHHG

Nucleotide


Download         Length: 600 bp        

>NTDB_id=635655 LTQ03_RS08275 WP_102481610.1 1838488..1839087(+) (pilN) [Vibrio splendidus strain 1_C04a]
ATGTTGCATCAAATTAACCTGCTGCCGTGGCGTGATGAGATTCGCGCTCAGCACAAGAAGCGCTTTATTCATCTGATCAT
TCTTGGTGTCATCATCGCGCTTGCAGGGCAATGGGCGGTTGGTCACTATTTTTACGACCAACAAGCCAAGCAGCAAGCCC
GTCTTAGTTACCTCAATCGATATATTGCCGAGATCGACCGACAAATTCAGTCATTAAAGGTCGCAGAGCAGGAGCATAAA
GCGATTCTGACTAGGCTTGATGTAGTCGAATCGTTGCAGCTTGGTCGCAACAAGACCACCGACTTTATGAACCTGATGCC
GGAGCTGATTCCCGAGGGTGTGTATGTCGACAAGATAAAGATGAATGGTCAGGAGATTGAAATGTCGGGTATCAGCGACA
GTACTGCTCGTCTCGCTACGATGTTGGACAACCTCGAGCGTTCAGATTCTCTGAAAGGGGTCGAGATGCACTCTATCGTT
CATAACCGCAAGCGCTTTAATAAAGAGTTTCAGACCTTCAAGGTCTCTTTTGTGTTTAGCCCTGTGTCTTTAGAAAGCAC
AACCGCGAGCAGAAAAGAGAAGGGGGCGCATCATGGCTAA

Domains

Predicted by InterproScan.

Fimbrial assembly protein (PilN) (PilN)

(103-174)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7W4GL81

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Vibrio cholerae strain A1552

61

100

0.613
  pilN Vibrio campbellii strain DS40M4

63.441

93.467

0.593