Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   LTQ03_RS06795 Genome accession   NZ_CP089201
Coordinates   1511749..1512861 (-) Length   370 a.a.
NCBI ID   WP_004735773.1    Uniprot ID   A0A1B9QE09
Organism   Vibrio splendidus strain 1_C04a     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1506749..1517861
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LTQ03_RS06765 (LTQ03_06765) hemF 1507306..1508223 (-) 918 WP_061025234.1 oxygen-dependent coproporphyrinogen oxidase -
  LTQ03_RS06770 (LTQ03_06770) - 1508243..1508800 (-) 558 WP_004735778.1 L-threonylcarbamoyladenylate synthase -
  LTQ03_RS06775 (LTQ03_06775) purE 1508996..1509481 (+) 486 WP_004735777.1 5-(carboxyamino)imidazole ribonucleotide mutase -
  LTQ03_RS06780 (LTQ03_06780) - 1509487..1510617 (+) 1131 WP_243584188.1 5-(carboxyamino)imidazole ribonucleotide synthase -
  LTQ03_RS06785 (LTQ03_06785) - 1510687..1511256 (-) 570 WP_102296542.1 topoisomerase DNA-binding C4 zinc finger domain-containing protein -
  LTQ03_RS06790 (LTQ03_06790) - 1511269..1511745 (-) 477 WP_004735774.1 DUF494 family protein -
  LTQ03_RS06795 (LTQ03_06795) dprA 1511749..1512861 (-) 1113 WP_004735773.1 DNA-processing protein DprA Machinery gene
  LTQ03_RS06800 (LTQ03_06800) - 1512858..1513949 (-) 1092 WP_243584189.1 LysM peptidoglycan-binding domain-containing protein -
  LTQ03_RS06805 (LTQ03_06805) def 1514090..1514602 (+) 513 WP_004735769.1 peptide deformylase -
  LTQ03_RS06810 (LTQ03_06810) fmt 1514641..1515606 (+) 966 WP_108100882.1 methionyl-tRNA formyltransferase -
  LTQ03_RS06815 (LTQ03_06815) rsmB 1515726..1517006 (+) 1281 WP_243584248.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -

Sequence

Protein


Download         Length: 370 a.a.        Molecular weight: 40083.81 Da        Isoelectric Point: 6.8795

>NTDB_id=635648 LTQ03_RS06795 WP_004735773.1 1511749..1512861(-) (dprA) [Vibrio splendidus strain 1_C04a]
MNEQQLSAWLTLSFVPQLGGKRLSRLLSIDSPSNIVGYSSQQLQALGLSAKQIAYLREQAPREVEACLEWQARQPNHHII
TPNCSHYPKLLNETASAPSVLFVKGHVEKLIEPQIAMVGSRNASLEGLQTAKSFAKEFVQNGLIVTSGLALGIDGYAHDG
ALDKGGETFAVLGSGLDSIYPARHRNLADRICENGALISEFRPSAKPRPEHFPRRNRIISGLSLGTLVVEAAEKSGSLIT
ARYAMEQGREVFALPGSIHNPTSRGGNSLIKAGACLVQSAQDVLIEIKSLLDWSIDQQPSLFEPTPSMGENEQLPFPQLL
ANVGLEATPVDILAQRTHIPVHEVMMQLLELELSGHVVAVSGGYIRKGRG

Nucleotide


Download         Length: 1113 bp        

>NTDB_id=635648 LTQ03_RS06795 WP_004735773.1 1511749..1512861(-) (dprA) [Vibrio splendidus strain 1_C04a]
GTGAATGAGCAACAACTGAGTGCTTGGCTAACTCTAAGTTTTGTTCCGCAATTGGGTGGCAAGCGCCTTTCTCGACTGCT
GAGCATTGATTCCCCTTCGAATATTGTTGGTTACTCAAGTCAGCAACTGCAAGCGCTTGGTTTGTCTGCCAAGCAAATTG
CCTATCTAAGAGAGCAAGCCCCAAGAGAAGTGGAGGCTTGCCTAGAGTGGCAAGCAAGACAACCCAACCATCACATCATT
ACCCCGAATTGCTCGCATTATCCCAAACTGCTGAATGAGACCGCCTCCGCGCCAAGCGTGCTTTTCGTTAAAGGTCACGT
TGAAAAACTGATTGAGCCTCAAATCGCTATGGTCGGCAGTCGTAATGCCAGTCTCGAAGGGTTGCAAACCGCGAAGTCCT
TCGCCAAAGAGTTCGTCCAAAACGGTTTGATTGTCACCAGTGGCTTAGCGCTCGGTATCGATGGCTATGCTCATGATGGT
GCTCTAGATAAAGGAGGGGAAACTTTTGCTGTATTGGGTTCTGGATTGGATTCCATTTATCCTGCGCGACACAGAAATTT
AGCCGATAGGATCTGTGAAAATGGTGCGTTGATTTCAGAGTTTCGCCCAAGTGCCAAACCACGACCTGAACATTTCCCTC
GCCGTAACCGTATTATAAGTGGGTTATCGCTCGGAACCTTGGTGGTTGAAGCGGCTGAGAAGAGTGGTTCTTTGATTACA
GCTCGCTATGCCATGGAGCAAGGCCGAGAGGTGTTTGCGCTTCCTGGCTCTATTCATAACCCAACCAGTCGAGGAGGTAA
TAGCTTAATCAAAGCTGGAGCATGCTTGGTACAGAGTGCACAAGATGTTCTGATTGAAATAAAGAGTCTGTTAGACTGGT
CTATCGATCAGCAACCCAGCTTGTTCGAACCTACGCCCAGTATGGGGGAAAATGAACAATTGCCATTTCCACAGCTGTTA
GCTAACGTAGGGTTAGAGGCGACACCCGTTGATATTTTGGCACAGAGAACCCATATACCTGTGCATGAGGTCATGATGCA
GCTTTTAGAGCTTGAGCTCTCAGGGCATGTTGTTGCAGTTTCCGGTGGCTATATTCGAAAGGGGAGAGGCTAA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(74-278)

DprA winged helix domain (DprA_WH)

(317-363)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1B9QE09

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Vibrio campbellii strain DS40M4

68.022

99.73

0.678
  dprA Vibrio cholerae strain A1552

58.556

100

0.592
  dprA Glaesserella parasuis strain SC1401

47.581

100

0.478
  dprA Neisseria meningitidis MC58

39.043

100

0.419
  dprA Neisseria meningitidis strain C311

39.043

100

0.419
  dprA Legionella pneumophila strain ERS1305867

46.341

88.649

0.411
  dprA Neisseria gonorrhoeae MS11

37.975

100

0.405
  dprA Neisseria gonorrhoeae strain FA1090

37.975

100

0.405
  dprA Haemophilus influenzae Rd KW20

44.51

91.081

0.405
  dprA Acinetobacter baumannii D1279779

41.818

89.189

0.373
  dprA Acinetobacter baumannii strain A118

41.718

88.108

0.368
  dprA Acinetobacter baylyi ADP1

40

90.541

0.362