Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbB   Type   Machinery gene
Locus tag   LRO88_RS20420 Genome accession   NZ_CP089148
Coordinates   3763409..3763750 (-) Length   113 a.a.
NCBI ID   WP_014478203.1    Uniprot ID   A0A0C3GLH9
Organism   Bacillus subtilis strain NIB353     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3758409..3768750
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LRO88_RS20405 hepAB 3758649..3761417 (+) 2769 WP_038427969.1 DEAD/DEAH box helicase -
  LRO88_RS20410 ywpJ 3761545..3762402 (-) 858 WP_038427970.1 phosphatase YwpJ -
  LRO88_RS20415 glcR 3762408..3763184 (-) 777 WP_003244075.1 transcriptional regulator GlcR -
  LRO88_RS20420 ssbB 3763409..3763750 (-) 342 WP_014478203.1 single-stranded DNA-binding protein SsbB Machinery gene
  LRO88_RS20425 ywpG 3763827..3764210 (-) 384 WP_014478204.1 DynA interaction protein YwpG -
  LRO88_RS20430 ywpF 3764385..3764795 (+) 411 WP_014481144.1 YwpF-like family protein -
  LRO88_RS20435 - 3764935..3765327 (-) 393 Protein_3982 class A sortase -
  LRO88_RS24305 - 3765389..3765541 (-) 153 Protein_3983 prealbumin-like fold domain-containing protein -
  LRO88_RS20445 ywpD 3765575..3766410 (+) 836 Protein_3984 sensor histidine kinase -
  LRO88_RS20450 mscL 3766458..3766853 (-) 396 WP_021445844.1 large conductance mechanosensitive channel protein MscL -
  LRO88_RS20455 fabZ 3766926..3767351 (-) 426 WP_003221796.1 3-hydroxyacyl-ACP dehydratase FabZ -
  LRO88_RS20460 rapD 3767543..3768607 (+) 1065 WP_087614758.1 aspartate phosphatase RapD -

Sequence

Protein


Download         Length: 113 a.a.        Molecular weight: 12462.11 Da        Isoelectric Point: 7.8150

>NTDB_id=635335 LRO88_RS20420 WP_014478203.1 3763409..3763750(-) (ssbB) [Bacillus subtilis strain NIB353]
MFNQVMLVGRLTKDPDLRYTSAGAAVAHVTLAVNRSFKNASGEIEADYVNCTLWRKTAENTALYCQKGSLVGVSGRIQTR
SYENAEGVNVYVTEVLADTVRFMDPKPREKAAD

Nucleotide


Download         Length: 342 bp        

>NTDB_id=635335 LRO88_RS20420 WP_014478203.1 3763409..3763750(-) (ssbB) [Bacillus subtilis strain NIB353]
ATGTTCAATCAGGTCATGCTTGTCGGACGTCTTACAAAAGATCCTGATCTTCGCTACACTTCAGCCGGTGCGGCAGTTGC
ACATGTTACGCTCGCGGTGAACCGCAGCTTCAAGAATGCTTCAGGTGAAATCGAAGCTGATTACGTCAATTGCACACTTT
GGAGAAAAACAGCTGAAAACACGGCGTTGTATTGCCAAAAAGGTTCTCTCGTCGGCGTAAGCGGACGGATTCAGACAAGA
AGCTATGAAAACGCGGAAGGCGTTAACGTGTATGTAACAGAAGTGTTGGCTGACACTGTTCGTTTTATGGACCCTAAACC
CAGGGAAAAAGCTGCTGATTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0C3GLH9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbB Bacillus subtilis subsp. subtilis str. 168

99.115

100

0.991
  ssbA Bacillus subtilis subsp. subtilis str. 168

64.151

93.805

0.602
  ssb Latilactobacillus sakei subsp. sakei 23K

59.434

93.805

0.558
  ssbB Streptococcus sobrinus strain NIDR 6715-7

45.37

95.575

0.434
  ssbB/cilA Streptococcus pneumoniae TIGR4

44.444

95.575

0.425
  ssbB/cilA Streptococcus mitis NCTC 12261

44.444

95.575

0.425
  ssbB/cilA Streptococcus pneumoniae Rx1

43.519

95.575

0.416
  ssbB/cilA Streptococcus pneumoniae D39

43.519

95.575

0.416
  ssbB/cilA Streptococcus pneumoniae R6

43.519

95.575

0.416
  ssbB/cilA Streptococcus mitis SK321

43.519

95.575

0.416
  ssbA Streptococcus mutans UA159

44.34

93.805

0.416
  ssbB Lactococcus lactis subsp. cremoris KW2

41.905

92.92

0.389