Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilE   Type   Machinery gene
Locus tag   LSO60_RS14975 Genome accession   NZ_CP089051
Coordinates   3154286..3154744 (-) Length   152 a.a.
NCBI ID   WP_263512515.1    Uniprot ID   A0AA46P2Q6
Organism   Acinetobacter ursingii strain RIVM_C010559     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3149286..3159744
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LSO60_RS14960 (LSO60_14940) - 3150070..3151734 (-) 1665 WP_263512512.1 PglL family O-oligosaccharyltransferase -
  LSO60_RS14965 (LSO60_14945) tfpZ 3151810..3152556 (-) 747 WP_263512513.1 TfpX/TfpZ family type IV pilin accessory protein -
  LSO60_RS14970 (LSO60_14950) - 3152553..3154223 (-) 1671 WP_263512514.1 PglL family O-oligosaccharyltransferase -
  LSO60_RS14975 (LSO60_14955) pilE 3154286..3154744 (-) 459 WP_263512515.1 pilin Machinery gene
  LSO60_RS14980 (LSO60_14960) - 3154950..3155510 (-) 561 WP_263512516.1 TPM domain-containing protein -
  LSO60_RS14985 (LSO60_14965) - 3155504..3156598 (-) 1095 WP_262437058.1 YgcG family protein -
  LSO60_RS14990 (LSO60_14970) - 3156625..3157215 (-) 591 WP_004991738.1 LemA family protein -
  LSO60_RS14995 (LSO60_14975) - 3157364..3158254 (-) 891 WP_262437059.1 metal-dependent hydrolase -
  LSO60_RS15000 (LSO60_14980) - 3158427..3158711 (-) 285 WP_035271663.1 SDR family oxidoreductase -
  LSO60_RS15005 (LSO60_14985) - 3158738..3158962 (+) 225 WP_004991744.1 LysR substrate-binding domain-containing protein -

Sequence

Protein


Download         Length: 152 a.a.        Molecular weight: 15330.52 Da        Isoelectric Point: 8.1036

>NTDB_id=634831 LSO60_RS14975 WP_263512515.1 3154286..3154744(-) (pilE) [Acinetobacter ursingii strain RIVM_C010559]
MNAQKGFTLIELMIVVAIIGILAAVALPAYQDYTVRAKMSEAVLAGSTCRTAVTEAFQAASSIPTAGNFGCESTSGSQVS
KYVTSVTTDNNGVITVTTANDASLKDAANKTIVMTPKTATGGTPAVGTGVGSWVCAPGSGMPAKYLPSSCRG

Nucleotide


Download         Length: 459 bp        

>NTDB_id=634831 LSO60_RS14975 WP_263512515.1 3154286..3154744(-) (pilE) [Acinetobacter ursingii strain RIVM_C010559]
ATGAACGCACAAAAAGGTTTTACCTTAATTGAATTGATGATCGTGGTCGCGATCATTGGTATCTTGGCAGCAGTTGCACT
ACCTGCTTATCAGGATTATACAGTACGTGCTAAAATGTCTGAAGCCGTATTAGCAGGTTCCACTTGTCGTACAGCTGTTA
CAGAGGCATTTCAGGCAGCGTCTTCTATTCCTACAGCAGGAAACTTTGGTTGCGAATCAACTTCAGGAAGTCAGGTGTCT
AAGTATGTAACAAGTGTAACGACAGATAATAATGGTGTAATTACTGTCACTACAGCAAATGATGCAAGTCTAAAAGATGC
AGCAAATAAAACTATTGTGATGACACCTAAAACCGCTACTGGTGGGACACCAGCAGTAGGTACTGGAGTGGGTTCATGGG
TTTGTGCTCCAGGAAGTGGTATGCCTGCTAAATATTTACCATCATCTTGCCGTGGTTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(1-27)

Pilin (bacterial filament) (Pilin)

(35-151)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilE Neisseria elongata subsp. glycolytica ATCC 29315

41.622

100

0.507
  comP Acinetobacter baylyi ADP1

41.509

100

0.434
  pilA2 Legionella pneumophila str. Paris

43.624

98.026

0.428
  pilA/pilA1 Eikenella corrodens VA1

41.139

100

0.428
  pilA2 Legionella pneumophila strain ERS1305867

42.953

98.026

0.421
  pilA Ralstonia pseudosolanacearum GMI1000

36.994

100

0.421
  pilE Neisseria gonorrhoeae strain FA1090

40.645

100

0.414
  pilE Neisseria gonorrhoeae MS11

37.805

100

0.408
  pilA/pilAI Pseudomonas stutzeri DSM 10701

39.869

100

0.401
  pilA Pseudomonas aeruginosa PAK

35.404

100

0.375
  pilA/pilAII Pseudomonas stutzeri DSM 10701

36.601

100

0.368