Detailed information
Bioinformatically predicted
Overview
| Name | pilA/pilAI | Type | Machinery gene |
| Locus tag | LQ329_RS14215 | Genome accession | NZ_CP088241 |
| Coordinates | 3107831..3108238 (+) | Length | 135 a.a. |
| NCBI ID | WP_114619185.1 | Uniprot ID | - |
| Organism | Stenotrophomonas maltophilia strain 2013-SM15 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 3102831..3113238
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LQ329_RS14190 (LQ329_14190) | - | 3103619..3103930 (+) | 312 | Protein_2766 | hypothetical protein | - |
| LQ329_RS14195 (LQ329_14195) | coaE | 3104129..3104740 (-) | 612 | WP_111687604.1 | dephospho-CoA kinase | - |
| LQ329_RS14200 (LQ329_14200) | - | 3104752..3105615 (-) | 864 | WP_005410800.1 | A24 family peptidase | - |
| LQ329_RS14205 (LQ329_14205) | pilC | 3105623..3106882 (-) | 1260 | WP_005410799.1 | type II secretion system F family protein | Machinery gene |
| LQ329_RS14210 (LQ329_14210) | - | 3107236..3107676 (+) | 441 | WP_005410798.1 | pilin | - |
| LQ329_RS14215 (LQ329_14215) | pilA/pilAI | 3107831..3108238 (+) | 408 | WP_114619185.1 | pilin | Machinery gene |
| LQ329_RS14220 (LQ329_14220) | pilB | 3108461..3110194 (+) | 1734 | WP_005414305.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| LQ329_RS14225 (LQ329_14225) | pilR | 3110321..3111694 (-) | 1374 | WP_049452342.1 | sigma-54 dependent transcriptional regulator | Regulator |
Sequence
Protein
Download Length: 135 a.a. Molecular weight: 14314.54 Da Isoelectric Point: 6.6934
>NTDB_id=633422 LQ329_RS14215 WP_114619185.1 3107831..3108238(+) (pilA/pilAI) [Stenotrophomonas maltophilia strain 2013-SM15]
MQIQKGFTLIELMIVVAIIAILAAIATVAFQPYIVRTQLTAALADLTPGKTKVEILVNEGRSASLVTPNYIGVAQNAHCS
NVEAELSDSGVGHISCTLKGHSALDGKDLILRRSAEGIWSCDGSAFEARYRPTGC
MQIQKGFTLIELMIVVAIIAILAAIATVAFQPYIVRTQLTAALADLTPGKTKVEILVNEGRSASLVTPNYIGVAQNAHCS
NVEAELSDSGVGHISCTLKGHSALDGKDLILRRSAEGIWSCDGSAFEARYRPTGC
Nucleotide
Download Length: 408 bp
>NTDB_id=633422 LQ329_RS14215 WP_114619185.1 3107831..3108238(+) (pilA/pilAI) [Stenotrophomonas maltophilia strain 2013-SM15]
ATGCAGATTCAAAAGGGCTTTACGCTCATCGAACTGATGATCGTGGTGGCTATCATCGCCATCCTGGCGGCGATCGCGAC
GGTGGCGTTCCAGCCATACATCGTCCGCACTCAGTTGACCGCCGCGCTGGCCGATCTCACACCAGGCAAGACCAAGGTGG
AAATCCTCGTCAATGAGGGCCGTTCGGCCAGCCTGGTCACGCCGAACTACATCGGTGTCGCCCAGAACGCCCACTGCTCG
AACGTCGAAGCCGAACTCAGCGACTCCGGTGTCGGCCACATCAGCTGCACCCTCAAGGGACACAGCGCGCTGGACGGCAA
GGACCTGATCCTGCGCCGCTCCGCCGAGGGCATCTGGAGCTGCGATGGCAGCGCGTTCGAAGCGCGCTATCGCCCGACCG
GCTGCTGA
ATGCAGATTCAAAAGGGCTTTACGCTCATCGAACTGATGATCGTGGTGGCTATCATCGCCATCCTGGCGGCGATCGCGAC
GGTGGCGTTCCAGCCATACATCGTCCGCACTCAGTTGACCGCCGCGCTGGCCGATCTCACACCAGGCAAGACCAAGGTGG
AAATCCTCGTCAATGAGGGCCGTTCGGCCAGCCTGGTCACGCCGAACTACATCGGTGTCGCCCAGAACGCCCACTGCTCG
AACGTCGAAGCCGAACTCAGCGACTCCGGTGTCGGCCACATCAGCTGCACCCTCAAGGGACACAGCGCGCTGGACGGCAA
GGACCTGATCCTGCGCCGCTCCGCCGAGGGCATCTGGAGCTGCGATGGCAGCGCGTTCGAAGCGCGCTATCGCCCGACCG
GCTGCTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilA/pilAI | Pseudomonas stutzeri DSM 10701 |
50.725 |
100 |
0.519 |
| pilA | Pseudomonas aeruginosa PAK |
38.926 |
100 |
0.43 |
| pilA/pilAII | Pseudomonas stutzeri DSM 10701 |
41.912 |
100 |
0.422 |
| pilA | Acinetobacter baumannii strain A118 |
40.876 |
100 |
0.415 |
| comP | Acinetobacter baylyi ADP1 |
35.616 |
100 |
0.385 |
| pilA2 | Legionella pneumophila strain ERS1305867 |
36.232 |
100 |
0.37 |
| pilA | Vibrio cholerae C6706 |
33.562 |
100 |
0.363 |
| pilA | Vibrio cholerae strain A1552 |
33.562 |
100 |
0.363 |
| pilA | Vibrio cholerae O1 biovar El Tor strain E7946 |
33.562 |
100 |
0.363 |