Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   LQ329_RS14205 Genome accession   NZ_CP088241
Coordinates   3105623..3106882 (-) Length   419 a.a.
NCBI ID   WP_005410799.1    Uniprot ID   A0AAI9CLB5
Organism   Stenotrophomonas maltophilia strain 2013-SM15     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3100623..3111882
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LQ329_RS14175 (LQ329_14175) - 3100647..3101117 (+) 471 WP_005410805.1 hypothetical protein -
  LQ329_RS14180 (LQ329_14180) - 3101126..3101803 (+) 678 WP_005410804.1 response regulator transcription factor -
  LQ329_RS14185 (LQ329_14185) - 3101808..3103136 (+) 1329 WP_231347390.1 HAMP domain-containing sensor histidine kinase -
  LQ329_RS14190 (LQ329_14190) - 3103619..3103930 (+) 312 Protein_2766 hypothetical protein -
  LQ329_RS14195 (LQ329_14195) coaE 3104129..3104740 (-) 612 WP_111687604.1 dephospho-CoA kinase -
  LQ329_RS14200 (LQ329_14200) - 3104752..3105615 (-) 864 WP_005410800.1 A24 family peptidase -
  LQ329_RS14205 (LQ329_14205) pilC 3105623..3106882 (-) 1260 WP_005410799.1 type II secretion system F family protein Machinery gene
  LQ329_RS14210 (LQ329_14210) - 3107236..3107676 (+) 441 WP_005410798.1 pilin -
  LQ329_RS14215 (LQ329_14215) pilA/pilAI 3107831..3108238 (+) 408 WP_114619185.1 pilin Machinery gene
  LQ329_RS14220 (LQ329_14220) pilB 3108461..3110194 (+) 1734 WP_005414305.1 type IV-A pilus assembly ATPase PilB Machinery gene
  LQ329_RS14225 (LQ329_14225) pilR 3110321..3111694 (-) 1374 WP_049452342.1 sigma-54 dependent transcriptional regulator Regulator

Sequence

Protein


Download         Length: 419 a.a.        Molecular weight: 45888.35 Da        Isoelectric Point: 10.1706

>NTDB_id=633421 LQ329_RS14205 WP_005410799.1 3105623..3106882(-) (pilC) [Stenotrophomonas maltophilia strain 2013-SM15]
MSVSRSAIKKEPVARATMELQPFVWVGTDKRGVKMKGEQLAKNANLLRAELRRQGINPGQVKPKPKPLFGASGSPVKPKD
IAFFSRQMATMMKSGVPIVSALDIIASGHKNPRMKKLVDTIRTDIEGGSSMYEAVSKHPVQFDELYRNLVRAGEGAGVLE
TVLDTVATYKENIEALKGKIKKALFYPIMVVVVAMLVSGIMLVFVVPQFEDVFKSFGAELPAFTQMVVNLSRFMVSWWWL
IFLIVVGSAVGAIMAYKRSPKMQHAMDRFVLKVPVIGQIMHNSAIARFSRTTAVTFKAGVPLVEALGIVAGATGNTVYEE
AVLRMRDDVSVGYPVNMSMKQTNLFPHMVIQMTGIGEEAGALDAMLFKVAEYYEQEVNNSVDALSSLLEPMIMVFIGTIV
GGMVIAMYLPIFKLGAVVG

Nucleotide


Download         Length: 1260 bp        

>NTDB_id=633421 LQ329_RS14205 WP_005410799.1 3105623..3106882(-) (pilC) [Stenotrophomonas maltophilia strain 2013-SM15]
ATGTCTGTCAGTCGCAGTGCGATCAAGAAAGAGCCGGTGGCGCGCGCCACCATGGAACTGCAGCCGTTTGTCTGGGTGGG
GACCGACAAGCGGGGCGTGAAGATGAAGGGCGAGCAGCTGGCCAAGAACGCCAACCTGCTGCGCGCCGAGCTGCGCCGCC
AGGGCATCAACCCGGGCCAGGTCAAGCCCAAGCCGAAGCCGCTGTTCGGCGCCTCCGGCAGCCCGGTCAAGCCCAAGGAC
ATCGCCTTCTTCAGCCGGCAGATGGCCACGATGATGAAATCCGGCGTGCCGATCGTGTCGGCGCTGGACATCATCGCCAG
CGGGCACAAGAACCCGCGGATGAAGAAGCTGGTCGACACCATCCGCACCGACATCGAGGGCGGTTCCTCGATGTACGAAG
CGGTCAGCAAGCACCCGGTGCAGTTCGACGAGCTGTACCGCAACCTGGTGCGGGCCGGCGAAGGCGCCGGCGTGCTGGAA
ACCGTGCTGGACACGGTGGCCACCTACAAGGAGAACATCGAAGCGCTGAAGGGCAAGATCAAGAAAGCGCTGTTCTACCC
GATCATGGTGGTGGTGGTGGCGATGCTGGTCAGCGGCATCATGCTGGTGTTCGTGGTCCCGCAGTTCGAGGACGTGTTCA
AGAGCTTTGGTGCCGAGCTGCCCGCCTTCACCCAGATGGTGGTGAATCTCTCGCGGTTCATGGTGTCGTGGTGGTGGCTG
ATATTCCTGATCGTGGTGGGCTCCGCTGTCGGTGCGATCATGGCCTACAAGCGCTCGCCGAAGATGCAGCATGCGATGGA
CCGGTTCGTGCTGAAGGTGCCGGTGATCGGGCAGATCATGCACAACAGCGCCATCGCCCGCTTCTCGCGCACCACTGCGG
TGACCTTCAAGGCCGGCGTACCGCTGGTGGAGGCGCTGGGCATCGTGGCCGGTGCTACCGGCAACACCGTGTACGAAGAG
GCGGTGCTGCGCATGCGCGACGACGTCTCGGTGGGTTACCCGGTGAACATGTCGATGAAGCAGACCAACCTGTTCCCACA
CATGGTCATCCAGATGACCGGCATCGGCGAAGAAGCCGGTGCGCTGGACGCCATGCTGTTCAAGGTGGCCGAGTACTATG
AGCAGGAGGTCAACAATTCGGTGGATGCCCTGAGCAGCCTGCTGGAACCGATGATCATGGTGTTCATTGGTACCATTGTG
GGCGGCATGGTGATTGCCATGTACCTTCCCATCTTCAAACTCGGCGCCGTCGTCGGATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(84-207)

Type II secretion system (T2SS), protein F (T2SSF)

(288-410)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

54.545

94.511

0.516
  pilC Legionella pneumophila strain ERS1305867

52.632

95.227

0.501
  pilC Acinetobacter baylyi ADP1

50.493

96.897

0.489
  pilC Acinetobacter baumannii D1279779

49.386

97.136

0.48
  pilG Neisseria gonorrhoeae MS11

43.97

94.988

0.418
  pilG Neisseria meningitidis 44/76-A

43.609

95.227

0.415
  pilC Vibrio cholerae strain A1552

41.872

96.897

0.406
  pilC Vibrio campbellii strain DS40M4

41.895

95.704

0.401
  pilC Thermus thermophilus HB27

37.562

95.943

0.36