Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   LQ329_RS14225 Genome accession   NZ_CP088241
Coordinates   3110321..3111694 (-) Length   457 a.a.
NCBI ID   WP_049452342.1    Uniprot ID   -
Organism   Stenotrophomonas maltophilia strain 2013-SM15     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 3105321..3116694
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LQ329_RS14205 (LQ329_14205) pilC 3105623..3106882 (-) 1260 WP_005410799.1 type II secretion system F family protein Machinery gene
  LQ329_RS14210 (LQ329_14210) - 3107236..3107676 (+) 441 WP_005410798.1 pilin -
  LQ329_RS14215 (LQ329_14215) pilA/pilAI 3107831..3108238 (+) 408 WP_114619185.1 pilin Machinery gene
  LQ329_RS14220 (LQ329_14220) pilB 3108461..3110194 (+) 1734 WP_005414305.1 type IV-A pilus assembly ATPase PilB Machinery gene
  LQ329_RS14225 (LQ329_14225) pilR 3110321..3111694 (-) 1374 WP_049452342.1 sigma-54 dependent transcriptional regulator Regulator
  LQ329_RS14230 (LQ329_14230) - 3111755..3113368 (-) 1614 WP_005414304.1 ATP-binding protein -
  LQ329_RS14235 (LQ329_14235) sucC 3113726..3114895 (+) 1170 WP_004154430.1 ADP-forming succinate--CoA ligase subunit beta -
  LQ329_RS14240 (LQ329_14240) sucD 3114917..3115792 (+) 876 WP_005410793.1 succinate--CoA ligase subunit alpha -

Sequence

Protein


Download         Length: 457 a.a.        Molecular weight: 49502.76 Da        Isoelectric Point: 6.4407

>NTDB_id=633424 LQ329_RS14225 WP_049452342.1 3110321..3111694(-) (pilR) [Stenotrophomonas maltophilia strain 2013-SM15]
MNETRSALVVDDERDIRELLVLTLGRMGLRISTAANLAEARELLASNPYDLCITDMRLPDGNGIELVSEIAQHYPRTPVA
MITAFGSMDLAVEALKAGAFDFVSKPVDISVLRGLVKHALELNNAERPAPGPNAEQGGRLLGHSQAMDVLRTTIGKVARS
QAPVYILGESGVGKELVARTIHAQGARAAGPFVPVNCGAIPGELMESEFFGHRKGSFSGAHADKPGLFQAAHGGTLFLDE
VAELPLQMQVKLLRAIQEKSVRAVGAATEEPVDVRILSATHKDLAELVEDGRFRHDLYYRINVIELKVPPLRERRQDLPE
LAAAVLARLARSHGRATPLLAPSALEALAQYAFPGNVRELENILERALALAEEDCIGADDLRLPQHAPRAPGSAAPAEAV
ADLQPGSAALPSYIEQLERSAIQRALEENRWNKTRTAAQLGITFRALRYKLKKLGME

Nucleotide


Download         Length: 1374 bp        

>NTDB_id=633424 LQ329_RS14225 WP_049452342.1 3110321..3111694(-) (pilR) [Stenotrophomonas maltophilia strain 2013-SM15]
ATGAATGAAACCCGCAGCGCCCTCGTCGTCGACGACGAACGCGACATCCGCGAACTGCTGGTGCTGACCCTCGGCCGCAT
GGGGCTGCGCATCAGTACCGCCGCCAACCTGGCCGAGGCACGTGAGCTGCTGGCCAGCAATCCGTACGACCTGTGCATCA
CCGACATGCGCCTGCCCGATGGCAACGGCATCGAACTGGTCAGCGAGATCGCCCAGCACTACCCGCGCACGCCGGTGGCG
ATGATCACCGCATTCGGCAGCATGGATCTCGCCGTGGAGGCACTGAAGGCCGGTGCGTTCGATTTCGTCAGCAAGCCGGT
GGACATCTCGGTGCTGCGCGGACTGGTCAAGCACGCGCTGGAACTCAACAACGCCGAGCGCCCCGCACCGGGCCCCAACG
CCGAACAGGGCGGACGCCTGCTGGGCCACTCGCAGGCCATGGATGTGCTGCGCACCACCATCGGCAAGGTCGCGCGCAGC
CAGGCGCCGGTCTACATCCTCGGCGAGTCGGGCGTCGGCAAGGAGCTGGTTGCACGCACCATCCATGCCCAGGGCGCGCG
CGCGGCCGGCCCGTTCGTGCCGGTCAACTGCGGCGCCATTCCCGGCGAGCTGATGGAGAGCGAATTCTTCGGCCACCGCA
AGGGCAGTTTCAGCGGCGCACACGCTGACAAGCCTGGCCTGTTCCAGGCTGCGCACGGCGGCACCCTGTTCCTGGACGAA
GTGGCTGAACTGCCGCTGCAGATGCAGGTGAAGCTGCTGCGCGCGATCCAGGAAAAGTCGGTGCGCGCGGTGGGCGCGGC
CACCGAGGAGCCGGTGGATGTCCGCATCCTCTCGGCCACCCATAAGGACCTGGCCGAGCTGGTCGAGGACGGGCGCTTCC
GCCACGACCTGTACTACCGCATCAACGTGATCGAACTGAAGGTGCCGCCACTGCGCGAACGCCGCCAGGACCTGCCCGAA
CTGGCCGCCGCCGTGCTGGCCCGCCTGGCCCGCAGCCACGGCCGCGCCACCCCGCTGCTGGCGCCCTCGGCGCTGGAAGC
CCTGGCGCAGTACGCGTTCCCGGGCAATGTGCGCGAGCTGGAGAACATCCTGGAACGTGCGCTGGCCCTGGCCGAGGAAG
ACTGCATCGGCGCCGATGACCTGCGCCTGCCACAGCACGCGCCGCGTGCTCCCGGCAGTGCGGCGCCCGCCGAAGCGGTG
GCCGACCTGCAGCCGGGCAGCGCTGCCCTGCCCTCCTACATCGAGCAGCTCGAGCGCAGCGCCATCCAGCGTGCGCTGGA
AGAGAACCGCTGGAACAAGACCCGTACCGCCGCGCAGCTGGGCATTACCTTCCGTGCGCTGCGCTACAAGCTGAAGAAGC
TGGGGATGGAGTAA

Domains

Predicted by InterproScan.

Bacterial regulatory protein, Fis family (HTH_8)

(414-454)

Sigma-54 interaction domain (Sigma54_activat)

(140-306)

Response regulator receiver domain (Response_reg)

(8-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

63.656

99.344

0.632
  pilR Acinetobacter baumannii strain A118

48.38

100

0.49
  luxO Vibrio cholerae strain A1552

37.079

97.374

0.361