Detailed information
Bioinformatically predicted
Overview
| Name | pilQ | Type | Machinery gene |
| Locus tag | CX511_RS24625 | Genome accession | NZ_CP088149 |
| Coordinates | 5478068..5479324 (-) | Length | 418 a.a. |
| NCBI ID | WP_052675472.1 | Uniprot ID | A0AB39BAW6 |
| Organism | Pseudomonas sp. S06B 330 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 5473068..5484324
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CX511_RS24610 | - | 5474730..5476331 (-) | 1602 | WP_101293751.1 | AAA family ATPase | - |
| CX511_RS24615 | aroB | 5476348..5477445 (-) | 1098 | WP_045181738.1 | 3-dehydroquinate synthase | - |
| CX511_RS24620 | aroK | 5477545..5478063 (-) | 519 | WP_028943928.1 | shikimate kinase AroK | - |
| CX511_RS24625 | pilQ | 5478068..5479324 (-) | 1257 | WP_052675472.1 | type IV pilus secretin PilQ | Machinery gene |
| CX511_RS24630 | - | 5479385..5480305 (-) | 921 | WP_158240011.1 | pilus assembly protein PilP | - |
| CX511_RS24635 | - | 5480317..5480844 (-) | 528 | WP_101293749.1 | PilN domain-containing protein | - |
| CX511_RS24640 | pilM | 5480832..5481770 (-) | 939 | WP_101293748.1 | pilus assembly protein PilM | - |
Sequence
Protein
Download Length: 418 a.a. Molecular weight: 45479.95 Da Isoelectric Point: 4.7968
>NTDB_id=632928 CX511_RS24625 WP_052675472.1 5478068..5479324(-) (pilQ) [Pseudomonas sp. S06B 330]
MVFSLQAVSEVSVSSVSPGEPLSLNFQDVEVRSVLQVLADFSGVNLVASDAVQGRVTLRLQDVPWEQALDLVLRSKGLEK
RTEGNVLLVAPIGELSGHERQLLEGRQQVAGLAPTRRELLAIHYAQAKDIAAVFQSLMDNDPHDFAQGALSVDERTNTLI
ARQTPERLEVLRQLIARLDVPVRQVMIEARIVEANVDYERSLGVRWGAEVNLGGGLVLGGGDTFVDLGAERATSAIGLGL
VRDNLLLDLELSAMEKSGNGEIISQPKVVTADKETARILKGTEVPYQETSGSGATSVTFREASLSLEVTPQITPDNRVIM
AVKVTKDEPDYLNALAQVPPIRKNEVNAKVRVSDGETIVIGGVYSTVQSKVVDKVPFFGDVPYVGRLFRRDVLQEKKSEL
LVFLTPRIMSDQAIAVSR
MVFSLQAVSEVSVSSVSPGEPLSLNFQDVEVRSVLQVLADFSGVNLVASDAVQGRVTLRLQDVPWEQALDLVLRSKGLEK
RTEGNVLLVAPIGELSGHERQLLEGRQQVAGLAPTRRELLAIHYAQAKDIAAVFQSLMDNDPHDFAQGALSVDERTNTLI
ARQTPERLEVLRQLIARLDVPVRQVMIEARIVEANVDYERSLGVRWGAEVNLGGGLVLGGGDTFVDLGAERATSAIGLGL
VRDNLLLDLELSAMEKSGNGEIISQPKVVTADKETARILKGTEVPYQETSGSGATSVTFREASLSLEVTPQITPDNRVIM
AVKVTKDEPDYLNALAQVPPIRKNEVNAKVRVSDGETIVIGGVYSTVQSKVVDKVPFFGDVPYVGRLFRRDVLQEKKSEL
LVFLTPRIMSDQAIAVSR
Nucleotide
Download Length: 1257 bp
>NTDB_id=632928 CX511_RS24625 WP_052675472.1 5478068..5479324(-) (pilQ) [Pseudomonas sp. S06B 330]
ATGGTGTTTTCGCTGCAGGCCGTCAGTGAAGTTTCAGTCAGTAGCGTTTCACCGGGCGAGCCGTTGTCATTGAACTTCCA
GGATGTCGAGGTTCGCTCGGTGTTACAGGTGCTGGCCGATTTTTCCGGGGTTAATCTGGTCGCCAGCGATGCGGTGCAGG
GCAGGGTGACCCTACGCCTGCAGGATGTGCCGTGGGAGCAGGCTCTGGACTTGGTGCTGCGCAGCAAGGGCTTGGAGAAA
CGCACCGAAGGCAATGTGTTGCTGGTGGCACCTATCGGCGAGCTCTCTGGGCATGAGCGGCAACTGCTGGAAGGGCGCCA
ACAGGTAGCGGGCTTGGCGCCCACACGACGTGAGTTGCTGGCGATCCACTATGCCCAGGCTAAGGATATAGCCGCCGTGT
TCCAGTCACTGATGGATAACGATCCCCACGACTTTGCTCAGGGTGCATTGAGTGTCGATGAGCGAACCAACACCCTGATC
GCCCGCCAGACACCGGAACGACTGGAGGTGCTGCGCCAGTTGATCGCGCGACTGGATGTGCCCGTACGGCAGGTGATGAT
CGAGGCGCGGATTGTCGAGGCTAACGTCGACTACGAGCGAAGCCTGGGCGTGCGCTGGGGGGCAGAGGTGAATTTAGGAG
GTGGTCTGGTGTTGGGCGGTGGCGACACCTTTGTCGACCTTGGTGCAGAGCGGGCCACCTCGGCGATTGGGCTGGGCCTG
GTGCGCGATAACCTGTTGTTGGACCTGGAGCTCAGTGCCATGGAGAAATCCGGCAACGGTGAAATCATTTCCCAGCCCAA
GGTAGTGACTGCCGACAAGGAAACCGCGCGGATCCTCAAGGGCACCGAAGTGCCCTATCAGGAAACCAGTGGCAGCGGCG
CTACGTCGGTGACCTTCCGTGAAGCGTCGCTGTCGTTGGAGGTGACGCCGCAGATAACCCCGGACAACCGGGTGATCATG
GCCGTCAAGGTCACCAAGGATGAACCGGACTACCTCAACGCCCTGGCCCAGGTGCCGCCGATCAGGAAGAACGAGGTAAA
CGCCAAGGTTCGCGTCAGCGATGGCGAGACCATCGTGATTGGCGGCGTGTACTCAACGGTGCAAAGTAAAGTTGTCGACA
AGGTGCCATTTTTCGGCGATGTGCCGTATGTTGGGCGGCTGTTTCGTCGCGATGTTCTACAAGAGAAAAAATCCGAGCTG
CTGGTCTTCCTGACTCCGCGTATCATGAGTGACCAGGCGATTGCTGTGAGTCGTTGA
ATGGTGTTTTCGCTGCAGGCCGTCAGTGAAGTTTCAGTCAGTAGCGTTTCACCGGGCGAGCCGTTGTCATTGAACTTCCA
GGATGTCGAGGTTCGCTCGGTGTTACAGGTGCTGGCCGATTTTTCCGGGGTTAATCTGGTCGCCAGCGATGCGGTGCAGG
GCAGGGTGACCCTACGCCTGCAGGATGTGCCGTGGGAGCAGGCTCTGGACTTGGTGCTGCGCAGCAAGGGCTTGGAGAAA
CGCACCGAAGGCAATGTGTTGCTGGTGGCACCTATCGGCGAGCTCTCTGGGCATGAGCGGCAACTGCTGGAAGGGCGCCA
ACAGGTAGCGGGCTTGGCGCCCACACGACGTGAGTTGCTGGCGATCCACTATGCCCAGGCTAAGGATATAGCCGCCGTGT
TCCAGTCACTGATGGATAACGATCCCCACGACTTTGCTCAGGGTGCATTGAGTGTCGATGAGCGAACCAACACCCTGATC
GCCCGCCAGACACCGGAACGACTGGAGGTGCTGCGCCAGTTGATCGCGCGACTGGATGTGCCCGTACGGCAGGTGATGAT
CGAGGCGCGGATTGTCGAGGCTAACGTCGACTACGAGCGAAGCCTGGGCGTGCGCTGGGGGGCAGAGGTGAATTTAGGAG
GTGGTCTGGTGTTGGGCGGTGGCGACACCTTTGTCGACCTTGGTGCAGAGCGGGCCACCTCGGCGATTGGGCTGGGCCTG
GTGCGCGATAACCTGTTGTTGGACCTGGAGCTCAGTGCCATGGAGAAATCCGGCAACGGTGAAATCATTTCCCAGCCCAA
GGTAGTGACTGCCGACAAGGAAACCGCGCGGATCCTCAAGGGCACCGAAGTGCCCTATCAGGAAACCAGTGGCAGCGGCG
CTACGTCGGTGACCTTCCGTGAAGCGTCGCTGTCGTTGGAGGTGACGCCGCAGATAACCCCGGACAACCGGGTGATCATG
GCCGTCAAGGTCACCAAGGATGAACCGGACTACCTCAACGCCCTGGCCCAGGTGCCGCCGATCAGGAAGAACGAGGTAAA
CGCCAAGGTTCGCGTCAGCGATGGCGAGACCATCGTGATTGGCGGCGTGTACTCAACGGTGCAAAGTAAAGTTGTCGACA
AGGTGCCATTTTTCGGCGATGTGCCGTATGTTGGGCGGCTGTTTCGTCGCGATGTTCTACAAGAGAAAAAATCCGAGCTG
CTGGTCTTCCTGACTCCGCGTATCATGAGTGACCAGGCGATTGCTGTGAGTCGTTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilQ | Pseudomonas aeruginosa PAK |
61.521 |
100 |
0.639 |
| comQ | Acinetobacter baylyi ADP1 |
42.022 |
100 |
0.447 |
| pilQ | Acinetobacter baumannii strain A118 |
40.347 |
100 |
0.445 |
| pilQ | Acinetobacter baumannii D1279779 |
40.347 |
100 |
0.445 |
| pilQ | Legionella pneumophila strain ERS1305867 |
42.755 |
100 |
0.431 |
| pilQ | Legionella pneumophila strain Lp02 |
42.755 |
100 |
0.431 |
| pilQ | Vibrio campbellii strain DS40M4 |
41.492 |
100 |
0.426 |
| pilQ | Vibrio cholerae O1 biovar El Tor strain E7946 |
41.827 |
99.522 |
0.416 |
| pilQ | Vibrio cholerae strain A1552 |
41.827 |
99.522 |
0.416 |
| pilQ | Neisseria meningitidis MC58 |
37.857 |
100 |
0.38 |
| pilQ | Neisseria meningitidis M1080 |
37.619 |
100 |
0.378 |
| pilQ | Neisseria gonorrhoeae strain FA1090 |
37.381 |
100 |
0.376 |