Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbB/cilA   Type   Machinery gene
Locus tag   N596_RS08210 Genome accession   NC_022584
Coordinates   1728749..1729144 (+) Length   131 a.a.
NCBI ID   WP_023027578.1    Uniprot ID   -
Organism   Streptococcus ilei     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1723749..1734144
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N596_RS10275 (N596_08400) - 1724148..1724303 (+) 156 WP_023027572.1 hypothetical protein -
  N596_RS08185 (N596_08405) - 1724413..1725897 (-) 1485 WP_023027573.1 DUF1846 domain-containing protein -
  N596_RS08190 (N596_08410) pepA 1726056..1727120 (-) 1065 WP_023027574.1 glutamyl aminopeptidase -
  N596_RS08195 (N596_08415) - 1727267..1727557 (+) 291 WP_023027575.1 DUF4651 domain-containing protein -
  N596_RS08200 (N596_08420) - 1727554..1727871 (+) 318 WP_023027576.1 thioredoxin family protein -
  N596_RS08205 (N596_08425) ytpR 1727886..1728512 (+) 627 WP_023027577.1 YtpR family tRNA-binding protein -
  N596_RS08210 (N596_08430) ssbB/cilA 1728749..1729144 (+) 396 WP_023027578.1 single-stranded DNA-binding protein Machinery gene
  N596_RS08215 (N596_08435) - 1729366..1730352 (+) 987 WP_023027579.1 substrate-binding domain-containing protein -
  N596_RS08220 (N596_08440) - 1730352..1731671 (+) 1320 WP_023027580.1 sensor histidine kinase -
  N596_RS08225 (N596_08445) - 1731668..1732354 (+) 687 WP_023027581.1 response regulator transcription factor -
  N596_RS08230 (N596_08450) - 1732351..1733658 (+) 1308 WP_023027582.1 ABC transporter substrate-binding protein -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 14677.65 Da        Isoelectric Point: 5.9328

>NTDB_id=62977 N596_RS08210 WP_023027578.1 1728749..1729144(+) (ssbB/cilA) [Streptococcus ilei]
MYNKVILIGRLVADPELHKTSTDKSVARATLAVNRRYKDQNGEREADFITLVVWGKLAETLVSYANKGSLISVDGELRTR
RYEKNGTTQYVTEVLCQGFQLLESRAQRAMRANGAGGDLADLILEEEELPF

Nucleotide


Download         Length: 396 bp        

>NTDB_id=62977 N596_RS08210 WP_023027578.1 1728749..1729144(+) (ssbB/cilA) [Streptococcus ilei]
ATGTACAATAAAGTAATTTTAATCGGGCGCCTTGTGGCTGACCCAGAGCTTCATAAGACCAGTACGGACAAGTCCGTTGC
GCGTGCGACCCTGGCTGTCAATCGTCGTTATAAGGATCAAAATGGCGAGCGGGAGGCGGACTTTATCACCCTAGTGGTCT
GGGGGAAATTAGCAGAGACCCTTGTCTCCTATGCCAATAAAGGGAGCTTGATCTCTGTGGACGGTGAGCTTCGAACCAGA
CGCTATGAGAAGAATGGAACGACCCAATATGTGACAGAAGTACTCTGTCAAGGCTTTCAGCTCTTAGAAAGTCGTGCTCA
ACGAGCGATGCGGGCTAATGGAGCAGGAGGAGATTTAGCGGATCTGATCCTCGAGGAGGAAGAGCTTCCCTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(3-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbB/cilA Streptococcus pneumoniae TIGR4

82.443

100

0.824
  ssbB/cilA Streptococcus mitis NCTC 12261

81.679

100

0.817
  ssbB/cilA Streptococcus pneumoniae Rx1

81.679

100

0.817
  ssbB/cilA Streptococcus pneumoniae D39

81.679

100

0.817
  ssbB/cilA Streptococcus pneumoniae R6

81.679

100

0.817
  ssbB/cilA Streptococcus mitis SK321

81.679

100

0.817
  ssbA Streptococcus mutans UA159

72.519

100

0.725
  ssbB Streptococcus sobrinus strain NIDR 6715-7

70.992

100

0.71
  ssbB Lactococcus lactis subsp. cremoris KW2

61.818

83.969

0.519
  ssb Latilactobacillus sakei subsp. sakei 23K

48.214

85.496

0.412
  ssbA Bacillus subtilis subsp. subtilis str. 168

50

80.916

0.405
  ssbB Bacillus subtilis subsp. subtilis str. 168

44.444

82.443

0.366

Multiple sequence alignment