Detailed information
Bioinformatically predicted
Overview
| Name | pilQ | Type | Machinery gene |
| Locus tag | LOY34_RS01395 | Genome accession | NZ_CP087199 |
| Coordinates | 311425..312666 (+) | Length | 413 a.a. |
| NCBI ID | WP_195885469.1 | Uniprot ID | - |
| Organism | Pseudomonas sp. B21-009 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 306425..317666
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LOY34_RS01380 (LOY34_01380) | - | 306983..309436 (-) | 2454 | WP_195885941.1 | penicillin-binding protein 1A | - |
| LOY34_RS01385 (LOY34_01385) | pilM | 309572..310567 (+) | 996 | WP_258664199.1 | pilus assembly protein PilM | - |
| LOY34_RS01390 (LOY34_01390) | - | 310564..311400 (+) | 837 | WP_258664201.1 | pilus assembly protein PilP | - |
| LOY34_RS01395 (LOY34_01395) | pilQ | 311425..312666 (+) | 1242 | WP_195885469.1 | type IV pilus secretin PilQ | Machinery gene |
| LOY34_RS01400 (LOY34_01400) | aroK | 312671..313189 (+) | 519 | WP_010222231.1 | shikimate kinase AroK | - |
| LOY34_RS01405 (LOY34_01405) | aroB | 313289..314386 (+) | 1098 | WP_195885470.1 | 3-dehydroquinate synthase | - |
| LOY34_RS01410 (LOY34_01410) | - | 314403..315998 (+) | 1596 | WP_258664203.1 | SPOR domain-containing protein | - |
Sequence
Protein
Download Length: 413 a.a. Molecular weight: 44496.81 Da Isoelectric Point: 5.1007
>NTDB_id=627948 LOY34_RS01395 WP_195885469.1 311425..312666(+) (pilQ) [Pseudomonas sp. B21-009]
MGKGAVVAVLIGCCLSAGAFAGKQLYDGEPLSLNFQDVEVRTVLQVLADFSGVNLVASDAVQGKVTLRLQDVPWDQALEL
VLRSKGLEQRKDGNVLLVAPLAELAGSAPSRRELIPIHHARATDIAELFHSLMAHEAGGASHGSLSVDERTNTLVASQSP
ERLEELRRLIGELDVPVRQVMIEARIVEANVDFEKSLGVRWGGEVQLGKGLSLGGGDTFVDLGADRASSSIGFGLVRNSA
LLDLELSAMERTGNGEIISQPKVVTADKETARILKGTEVPYQETSGSGATSVTFREASLSLEVTPQITPDNRVIMAVKVT
KDEPDYLNALDHVPAIRKNEVNAKVRINDGETIVIGGVYSTVQSKVVDKVPFFGDVPYVGRLFRRDVLQEKKSELLVFLT
PRIMSDQAIAVSR
MGKGAVVAVLIGCCLSAGAFAGKQLYDGEPLSLNFQDVEVRTVLQVLADFSGVNLVASDAVQGKVTLRLQDVPWDQALEL
VLRSKGLEQRKDGNVLLVAPLAELAGSAPSRRELIPIHHARATDIAELFHSLMAHEAGGASHGSLSVDERTNTLVASQSP
ERLEELRRLIGELDVPVRQVMIEARIVEANVDFEKSLGVRWGGEVQLGKGLSLGGGDTFVDLGADRASSSIGFGLVRNSA
LLDLELSAMERTGNGEIISQPKVVTADKETARILKGTEVPYQETSGSGATSVTFREASLSLEVTPQITPDNRVIMAVKVT
KDEPDYLNALDHVPAIRKNEVNAKVRINDGETIVIGGVYSTVQSKVVDKVPFFGDVPYVGRLFRRDVLQEKKSELLVFLT
PRIMSDQAIAVSR
Nucleotide
Download Length: 1242 bp
>NTDB_id=627948 LOY34_RS01395 WP_195885469.1 311425..312666(+) (pilQ) [Pseudomonas sp. B21-009]
ATGGGCAAGGGAGCTGTGGTTGCGGTGCTGATAGGCTGTTGCCTGTCTGCCGGCGCGTTTGCGGGCAAGCAACTGTACGA
CGGTGAGCCGCTGTCATTGAATTTTCAGGATGTCGAAGTGCGCACGGTACTGCAGGTGCTGGCTGATTTTTCCGGGGTCA
ACCTGGTGGCCAGTGATGCGGTGCAGGGCAAGGTGACCTTGCGCTTGCAGGATGTGCCCTGGGACCAGGCGCTGGAGCTG
GTGCTGCGCAGCAAGGGCCTGGAGCAGCGCAAGGATGGCAATGTATTGCTGGTCGCACCGCTTGCCGAACTGGCCGGGTC
CGCGCCGTCGCGGCGCGAGCTGATACCGATCCACCACGCCAGGGCCACCGATATCGCCGAGCTTTTCCACAGCCTGATGG
CCCATGAGGCCGGCGGCGCCAGCCATGGTTCGCTGAGTGTCGATGAGCGCACCAACACCCTGGTCGCCAGCCAGTCGCCG
GAACGTCTGGAAGAGCTGCGCAGGTTGATCGGCGAACTCGATGTGCCGGTACGCCAGGTCATGATCGAGGCGCGGATCGT
CGAGGCCAACGTCGATTTTGAAAAGAGCCTGGGTGTGCGCTGGGGTGGCGAGGTGCAGTTGGGCAAGGGCTTGAGCCTGG
GCGGTGGCGATACCTTCGTCGACCTTGGCGCGGACCGGGCATCGTCGAGTATCGGCTTTGGCCTGGTGCGCAACAGTGCG
CTGCTCGACCTGGAACTGAGCGCAATGGAGCGCACCGGCAACGGCGAAATCATCTCCCAGCCCAAGGTGGTCACCGCCGA
CAAGGAAACCGCGCGGATCCTCAAGGGCACCGAGGTGCCGTATCAGGAAACCAGCGGCAGCGGCGCTACCTCGGTGACCT
TCCGCGAAGCCTCGCTGTCCCTTGAGGTAACCCCGCAGATCACCCCGGACAACCGGGTAATCATGGCGGTCAAGGTGACC
AAGGACGAGCCCGACTACCTCAACGCCCTGGATCACGTGCCAGCGATCCGTAAAAACGAGGTCAACGCCAAGGTGCGTAT
CAATGATGGCGAGACCATCGTCATCGGCGGCGTGTACTCGACGGTGCAAAGTAAAGTTGTCGACAAGGTGCCATTTTTCG
GCGATGTGCCGTATGTTGGGCGGCTGTTTCGTCGCGATGTTCTACAAGAGAAAAAATCCGAGCTGCTGGTCTTCCTGACT
CCGCGTATCATGAGTGACCAGGCGATTGCTGTGAGTCGTTGA
ATGGGCAAGGGAGCTGTGGTTGCGGTGCTGATAGGCTGTTGCCTGTCTGCCGGCGCGTTTGCGGGCAAGCAACTGTACGA
CGGTGAGCCGCTGTCATTGAATTTTCAGGATGTCGAAGTGCGCACGGTACTGCAGGTGCTGGCTGATTTTTCCGGGGTCA
ACCTGGTGGCCAGTGATGCGGTGCAGGGCAAGGTGACCTTGCGCTTGCAGGATGTGCCCTGGGACCAGGCGCTGGAGCTG
GTGCTGCGCAGCAAGGGCCTGGAGCAGCGCAAGGATGGCAATGTATTGCTGGTCGCACCGCTTGCCGAACTGGCCGGGTC
CGCGCCGTCGCGGCGCGAGCTGATACCGATCCACCACGCCAGGGCCACCGATATCGCCGAGCTTTTCCACAGCCTGATGG
CCCATGAGGCCGGCGGCGCCAGCCATGGTTCGCTGAGTGTCGATGAGCGCACCAACACCCTGGTCGCCAGCCAGTCGCCG
GAACGTCTGGAAGAGCTGCGCAGGTTGATCGGCGAACTCGATGTGCCGGTACGCCAGGTCATGATCGAGGCGCGGATCGT
CGAGGCCAACGTCGATTTTGAAAAGAGCCTGGGTGTGCGCTGGGGTGGCGAGGTGCAGTTGGGCAAGGGCTTGAGCCTGG
GCGGTGGCGATACCTTCGTCGACCTTGGCGCGGACCGGGCATCGTCGAGTATCGGCTTTGGCCTGGTGCGCAACAGTGCG
CTGCTCGACCTGGAACTGAGCGCAATGGAGCGCACCGGCAACGGCGAAATCATCTCCCAGCCCAAGGTGGTCACCGCCGA
CAAGGAAACCGCGCGGATCCTCAAGGGCACCGAGGTGCCGTATCAGGAAACCAGCGGCAGCGGCGCTACCTCGGTGACCT
TCCGCGAAGCCTCGCTGTCCCTTGAGGTAACCCCGCAGATCACCCCGGACAACCGGGTAATCATGGCGGTCAAGGTGACC
AAGGACGAGCCCGACTACCTCAACGCCCTGGATCACGTGCCAGCGATCCGTAAAAACGAGGTCAACGCCAAGGTGCGTAT
CAATGATGGCGAGACCATCGTCATCGGCGGCGTGTACTCGACGGTGCAAAGTAAAGTTGTCGACAAGGTGCCATTTTTCG
GCGATGTGCCGTATGTTGGGCGGCTGTTTCGTCGCGATGTTCTACAAGAGAAAAAATCCGAGCTGCTGGTCTTCCTGACT
CCGCGTATCATGAGTGACCAGGCGATTGCTGTGAGTCGTTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilQ | Pseudomonas aeruginosa PAK |
59.633 |
100 |
0.63 |
| pilQ | Acinetobacter baumannii D1279779 |
40.523 |
100 |
0.45 |
| pilQ | Acinetobacter baumannii strain A118 |
40.523 |
100 |
0.45 |
| comQ | Acinetobacter baylyi ADP1 |
41.425 |
100 |
0.45 |
| pilQ | Legionella pneumophila strain Lp02 |
42.043 |
100 |
0.429 |
| pilQ | Legionella pneumophila strain ERS1305867 |
42.043 |
100 |
0.429 |
| pilQ | Vibrio cholerae O1 biovar El Tor strain E7946 |
41.412 |
100 |
0.426 |
| pilQ | Vibrio cholerae strain A1552 |
41.412 |
100 |
0.426 |
| pilQ | Vibrio campbellii strain DS40M4 |
41.274 |
100 |
0.424 |
| pilQ | Neisseria meningitidis MC58 |
37.011 |
100 |
0.39 |
| pilQ | Neisseria gonorrhoeae strain FA1090 |
36.916 |
100 |
0.383 |
| pilQ | Neisseria meningitidis M1080 |
36.449 |
100 |
0.378 |