Detailed information
Bioinformatically predicted
Overview
| Name | pilQ | Type | Machinery gene |
| Locus tag | LOY37_RS01395 | Genome accession | NZ_CP087197 |
| Coordinates | 311572..312813 (+) | Length | 413 a.a. |
| NCBI ID | WP_258716175.1 | Uniprot ID | - |
| Organism | Pseudomonas sp. B21-012 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 306572..317813
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LOY37_RS01380 (LOY37_01380) | - | 307022..309475 (-) | 2454 | WP_177329133.1 | penicillin-binding protein 1A | - |
| LOY37_RS01385 (LOY37_01385) | pilM | 309611..310696 (+) | 1086 | WP_258716173.1 | pilus assembly protein PilM | - |
| LOY37_RS01390 (LOY37_01390) | - | 310693..311547 (+) | 855 | WP_258716174.1 | pilus assembly protein PilP | - |
| LOY37_RS01395 (LOY37_01395) | pilQ | 311572..312813 (+) | 1242 | WP_258716175.1 | type IV pilus secretin PilQ | Machinery gene |
| LOY37_RS01400 (LOY37_01400) | aroK | 312818..313336 (+) | 519 | WP_010222231.1 | shikimate kinase AroK | - |
| LOY37_RS01405 (LOY37_01405) | aroB | 313436..314533 (+) | 1098 | WP_010222232.1 | 3-dehydroquinate synthase | - |
| LOY37_RS01410 (LOY37_01410) | - | 314550..316145 (+) | 1596 | WP_045193950.1 | SPOR domain-containing protein | - |
Sequence
Protein
Download Length: 413 a.a. Molecular weight: 44466.83 Da Isoelectric Point: 5.2108
>NTDB_id=627895 LOY37_RS01395 WP_258716175.1 311572..312813(+) (pilQ) [Pseudomonas sp. B21-012]
MGKGAVVAVLIGCCLSAGAFAGKQLYGGEPLSLNFQDVEVRTVLQVLADFSGVNLVASDAVQGKVTLRLQDVPWDQALEL
VLRSKGLEQRKDGNVLLVAPLAELAGSAPSRRELIPIHHARATDIAELFHSLMAHEAGGASHGSLSVDERTNTLVASQSP
ERLEELRRLIGELDVPVRQVMIEARIVEANVDFEKSLGVRWGGEVQLGKGLSLGGGDTFVDLGADRASSSIGFGLVRNSA
LLDLELSAMERTGNGEIISQPKVVTADKETARILKGTEVPYQETSGSGATSVTFREASLSLEVTPQITPDNRVIMVVKVT
KDEPDYLNALDHVPAIRKNEVNAKVRINDGETIVIGGVYSTVQSKVVDKVPFFGDVPYVGRLFRRDVLQEKKSELLVFLT
PRIMSDQAIAVSR
MGKGAVVAVLIGCCLSAGAFAGKQLYGGEPLSLNFQDVEVRTVLQVLADFSGVNLVASDAVQGKVTLRLQDVPWDQALEL
VLRSKGLEQRKDGNVLLVAPLAELAGSAPSRRELIPIHHARATDIAELFHSLMAHEAGGASHGSLSVDERTNTLVASQSP
ERLEELRRLIGELDVPVRQVMIEARIVEANVDFEKSLGVRWGGEVQLGKGLSLGGGDTFVDLGADRASSSIGFGLVRNSA
LLDLELSAMERTGNGEIISQPKVVTADKETARILKGTEVPYQETSGSGATSVTFREASLSLEVTPQITPDNRVIMVVKVT
KDEPDYLNALDHVPAIRKNEVNAKVRINDGETIVIGGVYSTVQSKVVDKVPFFGDVPYVGRLFRRDVLQEKKSELLVFLT
PRIMSDQAIAVSR
Nucleotide
Download Length: 1242 bp
>NTDB_id=627895 LOY37_RS01395 WP_258716175.1 311572..312813(+) (pilQ) [Pseudomonas sp. B21-012]
ATGGGCAAGGGGGCTGTGGTTGCGGTGCTGATAGGCTGTTGCCTGTCTGCCGGCGCGTTTGCGGGCAAGCAACTGTACGG
CGGTGAGCCGCTGTCATTGAATTTTCAGGATGTCGAGGTGCGTACGGTACTGCAGGTGCTGGCTGATTTTTCCGGGGTCA
ACCTGGTGGCCAGTGATGCGGTGCAGGGCAAGGTGACCTTGCGCTTGCAGGATGTGCCCTGGGACCAGGCGCTGGAGCTG
GTGCTGCGCAGCAAGGGCCTGGAGCAGCGCAAGGATGGCAATGTATTGCTGGTCGCACCGCTTGCCGAACTGGCCGGGTC
CGCGCCGTCGCGGCGCGAGCTGATACCGATCCACCACGCCAGGGCCACCGATATCGCCGAGCTTTTCCACAGCCTGATGG
CCCATGAGGCCGGCGGCGCCAGCCATGGTTCGCTAAGTGTCGATGAGCGCACCAACACCCTGGTCGCCAGCCAGTCGCCG
GAACGTCTGGAAGAGCTGCGCAGGTTGATCGGCGAACTCGATGTGCCGGTACGCCAGGTCATGATCGAGGCGCGGATCGT
CGAGGCCAACGTCGATTTTGAAAAGAGCCTGGGTGTGCGCTGGGGTGGCGAGGTGCAGTTGGGCAAGGGCTTGAGCCTGG
GCGGTGGCGATACCTTCGTCGACCTTGGCGCGGACCGGGCATCGTCGAGTATCGGCTTTGGCCTGGTGCGCAATAGTGCG
CTGCTCGACCTGGAACTGAGCGCCATGGAGCGCACCGGCAACGGCGAAATCATTTCCCAGCCCAAGGTGGTCACCGCTGA
CAAGGAAACCGCGCGGATCCTCAAGGGCACCGAGGTGCCGTATCAGGAAACCAGCGGCAGCGGCGCTACCTCGGTGACCT
TCCGCGAGGCCTCGCTGTCCCTTGAGGTCACCCCGCAGATCACCCCGGACAACCGGGTAATCATGGTAGTCAAGGTGACC
AAGGACGAGCCCGACTACCTCAACGCCCTGGATCACGTGCCGGCGATCCGTAAAAACGAGGTCAACGCCAAGGTGCGTAT
CAATGATGGCGAGACCATCGTCATCGGCGGCGTGTACTCGACGGTGCAAAGTAAAGTTGTCGACAAGGTGCCATTTTTCG
GCGATGTGCCGTATGTTGGGCGGCTGTTTCGTCGCGATGTTCTACAAGAGAAAAAATCCGAGCTGCTGGTCTTCCTGACT
CCGCGTATCATGAGTGACCAGGCGATTGCTGTGAGTCGTTGA
ATGGGCAAGGGGGCTGTGGTTGCGGTGCTGATAGGCTGTTGCCTGTCTGCCGGCGCGTTTGCGGGCAAGCAACTGTACGG
CGGTGAGCCGCTGTCATTGAATTTTCAGGATGTCGAGGTGCGTACGGTACTGCAGGTGCTGGCTGATTTTTCCGGGGTCA
ACCTGGTGGCCAGTGATGCGGTGCAGGGCAAGGTGACCTTGCGCTTGCAGGATGTGCCCTGGGACCAGGCGCTGGAGCTG
GTGCTGCGCAGCAAGGGCCTGGAGCAGCGCAAGGATGGCAATGTATTGCTGGTCGCACCGCTTGCCGAACTGGCCGGGTC
CGCGCCGTCGCGGCGCGAGCTGATACCGATCCACCACGCCAGGGCCACCGATATCGCCGAGCTTTTCCACAGCCTGATGG
CCCATGAGGCCGGCGGCGCCAGCCATGGTTCGCTAAGTGTCGATGAGCGCACCAACACCCTGGTCGCCAGCCAGTCGCCG
GAACGTCTGGAAGAGCTGCGCAGGTTGATCGGCGAACTCGATGTGCCGGTACGCCAGGTCATGATCGAGGCGCGGATCGT
CGAGGCCAACGTCGATTTTGAAAAGAGCCTGGGTGTGCGCTGGGGTGGCGAGGTGCAGTTGGGCAAGGGCTTGAGCCTGG
GCGGTGGCGATACCTTCGTCGACCTTGGCGCGGACCGGGCATCGTCGAGTATCGGCTTTGGCCTGGTGCGCAATAGTGCG
CTGCTCGACCTGGAACTGAGCGCCATGGAGCGCACCGGCAACGGCGAAATCATTTCCCAGCCCAAGGTGGTCACCGCTGA
CAAGGAAACCGCGCGGATCCTCAAGGGCACCGAGGTGCCGTATCAGGAAACCAGCGGCAGCGGCGCTACCTCGGTGACCT
TCCGCGAGGCCTCGCTGTCCCTTGAGGTCACCCCGCAGATCACCCCGGACAACCGGGTAATCATGGTAGTCAAGGTGACC
AAGGACGAGCCCGACTACCTCAACGCCCTGGATCACGTGCCGGCGATCCGTAAAAACGAGGTCAACGCCAAGGTGCGTAT
CAATGATGGCGAGACCATCGTCATCGGCGGCGTGTACTCGACGGTGCAAAGTAAAGTTGTCGACAAGGTGCCATTTTTCG
GCGATGTGCCGTATGTTGGGCGGCTGTTTCGTCGCGATGTTCTACAAGAGAAAAAATCCGAGCTGCTGGTCTTCCTGACT
CCGCGTATCATGAGTGACCAGGCGATTGCTGTGAGTCGTTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilQ | Pseudomonas aeruginosa PAK |
59.633 |
100 |
0.63 |
| pilQ | Acinetobacter baumannii strain A118 |
40.523 |
100 |
0.45 |
| pilQ | Acinetobacter baumannii D1279779 |
40.523 |
100 |
0.45 |
| comQ | Acinetobacter baylyi ADP1 |
41.425 |
100 |
0.45 |
| pilQ | Legionella pneumophila strain ERS1305867 |
42.043 |
100 |
0.429 |
| pilQ | Legionella pneumophila strain Lp02 |
42.043 |
100 |
0.429 |
| pilQ | Vibrio cholerae O1 biovar El Tor strain E7946 |
41.509 |
100 |
0.426 |
| pilQ | Vibrio cholerae strain A1552 |
41.509 |
100 |
0.426 |
| pilQ | Vibrio campbellii strain DS40M4 |
41.371 |
100 |
0.424 |
| pilQ | Neisseria meningitidis MC58 |
37.011 |
100 |
0.39 |
| pilQ | Neisseria gonorrhoeae strain FA1090 |
36.916 |
100 |
0.383 |
| pilQ | Neisseria meningitidis M1080 |
36.449 |
100 |
0.378 |