Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   LOY31_RS24715 Genome accession   NZ_CP087192
Coordinates   5504950..5506167 (+) Length   405 a.a.
NCBI ID   WP_258712317.1    Uniprot ID   -
Organism   Pseudomonas sp. B21-021     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5499950..5511167
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LOY31_RS24695 (LOY31_24675) - 5501480..5501776 (+) 297 WP_258712316.1 DUF2845 domain-containing protein -
  LOY31_RS24700 (LOY31_24680) - 5501944..5502300 (-) 357 WP_007959598.1 BON domain-containing protein -
  LOY31_RS24705 (LOY31_24685) pilA/pilAI 5502598..5503020 (-) 423 WP_007959597.1 pilin Machinery gene
  LOY31_RS24710 (LOY31_24690) pilB 5503247..5504947 (+) 1701 WP_221535412.1 type IV-A pilus assembly ATPase PilB Machinery gene
  LOY31_RS24715 (LOY31_24695) pilC 5504950..5506167 (+) 1218 WP_258712317.1 type II secretion system F family protein Machinery gene
  LOY31_RS24720 (LOY31_24700) pilD 5506169..5507041 (+) 873 WP_258712318.1 A24 family peptidase Machinery gene
  LOY31_RS24725 (LOY31_24705) coaE 5507038..5507661 (+) 624 WP_007959586.1 dephospho-CoA kinase -
  LOY31_RS24730 (LOY31_24710) yacG 5507658..5507858 (+) 201 WP_007959585.1 DNA gyrase inhibitor YacG -
  LOY31_RS24735 (LOY31_24715) - 5507865..5508080 (-) 216 WP_007959584.1 hypothetical protein -
  LOY31_RS24740 (LOY31_24720) - 5508146..5508835 (-) 690 WP_221535409.1 energy-coupling factor ABC transporter permease -
  LOY31_RS24745 (LOY31_24725) - 5508969..5509595 (+) 627 WP_007959580.1 DUF1780 domain-containing protein -
  LOY31_RS24750 (LOY31_24730) - 5509592..5510119 (+) 528 WP_258712319.1 MOSC domain-containing protein -
  LOY31_RS24755 (LOY31_24735) - 5510171..5510344 (+) 174 WP_007909875.1 DUF3094 domain-containing protein -

Sequence

Protein


Download         Length: 405 a.a.        Molecular weight: 44019.66 Da        Isoelectric Point: 10.1093

>NTDB_id=627765 LOY31_RS24715 WP_258712317.1 5504950..5506167(+) (pilC) [Pseudomonas sp. B21-021]
MAVKAAKISVYAWEGTDRKGSKVTGELSGQNPALVKAQLRKQGISPGKVRKKSASLLSFGKRIKAQDIALFTRQMATMMK
AGVPLLQSFDIIGEGFENPAMRKLVDEVKQEVAAGNSFAAALRKKPQYFDELYCNLVDAGEQSGALDTLLERVATYKEKS
ESLKAKIKKAMTYPSAVVLVAAVVTGILLVKVVPQFQSVFSGFGAELPAFTLMVISLSEFMQQWWWAILGALVAAFFGTR
HALKKSQALRDRRDAWFLKLPLVGTLMYKSAVARFARTLSTTFAAGVPLVEALDSVAGATGNVVFKRAVLRIRQDVSTGM
QLNFSMRSTGIFPNMAVQMTAIGEESGALDEMLDKVAGFYEDEVDNMVDNLTSLMEPFIMVVLGVIVGGLVVAMYLPIFQ
LGSAI

Nucleotide


Download         Length: 1218 bp        

>NTDB_id=627765 LOY31_RS24715 WP_258712317.1 5504950..5506167(+) (pilC) [Pseudomonas sp. B21-021]
ATGGCGGTCAAGGCAGCGAAAATCAGTGTCTACGCCTGGGAAGGCACGGACCGCAAAGGCAGCAAGGTGACCGGCGAGCT
GAGCGGCCAGAACCCCGCACTGGTCAAGGCCCAGTTGCGCAAGCAGGGCATCAGCCCGGGCAAGGTACGCAAGAAATCCG
CCTCGCTGCTGAGCTTCGGCAAGCGCATCAAGGCCCAGGACATTGCCCTGTTCACCCGGCAGATGGCGACCATGATGAAG
GCCGGCGTACCGCTGTTGCAGTCGTTCGACATCATTGGCGAAGGCTTCGAGAACCCGGCCATGCGCAAGCTGGTCGACGA
GGTGAAACAGGAAGTCGCCGCCGGCAACAGCTTCGCCGCCGCGCTGCGCAAGAAGCCTCAGTATTTTGACGAGTTGTACT
GCAACCTGGTGGATGCCGGTGAGCAGTCCGGCGCGCTCGACACCCTGCTGGAACGGGTCGCGACCTACAAGGAAAAGAGC
GAAAGCCTCAAGGCCAAGATCAAGAAGGCCATGACCTACCCGTCCGCAGTGGTGCTGGTGGCAGCGGTGGTTACCGGGAT
TCTGCTGGTCAAGGTGGTGCCGCAGTTTCAGTCGGTGTTCTCTGGCTTCGGTGCCGAACTGCCGGCCTTCACGCTGATGG
TGATCAGCCTGTCCGAATTCATGCAGCAATGGTGGTGGGCGATTCTCGGTGCGCTGGTGGCGGCTTTTTTCGGCACCCGC
CATGCCCTGAAAAAATCCCAGGCGCTGCGCGACCGGCGCGATGCCTGGTTTCTCAAGCTGCCGCTGGTGGGCACATTGAT
GTACAAGTCCGCCGTGGCGCGGTTTGCCCGGACCCTGTCGACCACCTTCGCCGCCGGCGTGCCGTTGGTGGAAGCGCTGG
ACTCGGTGGCCGGTGCCACCGGCAACGTGGTGTTCAAGCGTGCCGTGCTACGCATCCGCCAGGACGTCTCTACCGGCATG
CAGCTGAATTTCTCGATGCGCTCCACCGGCATCTTTCCGAACATGGCGGTGCAGATGACCGCCATCGGCGAAGAGTCCGG
CGCACTGGACGAGATGCTCGACAAGGTCGCAGGTTTCTATGAGGACGAAGTGGACAACATGGTCGACAACCTCACCAGCC
TGATGGAGCCGTTCATCATGGTGGTGCTGGGGGTGATCGTCGGCGGTCTGGTGGTGGCGATGTACCTGCCGATCTTCCAA
CTCGGCTCAGCGATCTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(275-397)

Type II secretion system (T2SS), protein F (T2SSF)

(71-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

75.062

100

0.751
  pilC Acinetobacter baylyi ADP1

59.314

100

0.598
  pilC Acinetobacter baumannii D1279779

59.314

100

0.598
  pilC Legionella pneumophila strain ERS1305867

53.75

98.765

0.531
  pilC Vibrio cholerae strain A1552

44.697

97.778

0.437
  pilG Neisseria gonorrhoeae MS11

43.424

99.506

0.432
  pilG Neisseria meningitidis 44/76-A

42.928

99.506

0.427
  pilC Vibrio campbellii strain DS40M4

41.379

100

0.415
  pilC Thermus thermophilus HB27

38.903

99.012

0.385