Detailed information
Bioinformatically predicted
Overview
| Name | pilD | Type | Machinery gene |
| Locus tag | LOY31_RS24720 | Genome accession | NZ_CP087192 |
| Coordinates | 5506169..5507041 (+) | Length | 290 a.a. |
| NCBI ID | WP_258712318.1 | Uniprot ID | - |
| Organism | Pseudomonas sp. B21-021 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 5501169..5512041
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LOY31_RS24695 (LOY31_24675) | - | 5501480..5501776 (+) | 297 | WP_258712316.1 | DUF2845 domain-containing protein | - |
| LOY31_RS24700 (LOY31_24680) | - | 5501944..5502300 (-) | 357 | WP_007959598.1 | BON domain-containing protein | - |
| LOY31_RS24705 (LOY31_24685) | pilA/pilAI | 5502598..5503020 (-) | 423 | WP_007959597.1 | pilin | Machinery gene |
| LOY31_RS24710 (LOY31_24690) | pilB | 5503247..5504947 (+) | 1701 | WP_221535412.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| LOY31_RS24715 (LOY31_24695) | pilC | 5504950..5506167 (+) | 1218 | WP_258712317.1 | type II secretion system F family protein | Machinery gene |
| LOY31_RS24720 (LOY31_24700) | pilD | 5506169..5507041 (+) | 873 | WP_258712318.1 | A24 family peptidase | Machinery gene |
| LOY31_RS24725 (LOY31_24705) | coaE | 5507038..5507661 (+) | 624 | WP_007959586.1 | dephospho-CoA kinase | - |
| LOY31_RS24730 (LOY31_24710) | yacG | 5507658..5507858 (+) | 201 | WP_007959585.1 | DNA gyrase inhibitor YacG | - |
| LOY31_RS24735 (LOY31_24715) | - | 5507865..5508080 (-) | 216 | WP_007959584.1 | hypothetical protein | - |
| LOY31_RS24740 (LOY31_24720) | - | 5508146..5508835 (-) | 690 | WP_221535409.1 | energy-coupling factor ABC transporter permease | - |
| LOY31_RS24745 (LOY31_24725) | - | 5508969..5509595 (+) | 627 | WP_007959580.1 | DUF1780 domain-containing protein | - |
| LOY31_RS24750 (LOY31_24730) | - | 5509592..5510119 (+) | 528 | WP_258712319.1 | MOSC domain-containing protein | - |
| LOY31_RS24755 (LOY31_24735) | - | 5510171..5510344 (+) | 174 | WP_007909875.1 | DUF3094 domain-containing protein | - |
| LOY31_RS24760 (LOY31_24740) | - | 5510408..5511706 (+) | 1299 | WP_064599500.1 | NAD(P)/FAD-dependent oxidoreductase | - |
Sequence
Protein
Download Length: 290 a.a. Molecular weight: 32292.65 Da Isoelectric Point: 7.6641
>NTDB_id=627766 LOY31_RS24720 WP_258712318.1 5506169..5507041(+) (pilD) [Pseudomonas sp. B21-021]
MPIDELFSLYPLAFVFTALLLGLVVGSFLNVLIWRLPKMLEREWRQQAHDVLGLPGEAPLPTYNLMLPHSQCPHCGHRIR
AWENIPLLSYVCLRGRCSSCTAPISKRYPLTELACALLSAFIAWHLGFGWPACLLIVLTWGLLAMSLIDTEHQLLPDVLV
LPLLWLGLIVNSFELFVSLHDALWGAVLGYMALWSVFWLFKLITGKDGIGHGDFKLLALLGAWGGWQILPLTILLSSLVG
AVLGVILLKLRDQKTSTPIPFGPYLAIAGWIALLWGGQITGFYWQFVGLK
MPIDELFSLYPLAFVFTALLLGLVVGSFLNVLIWRLPKMLEREWRQQAHDVLGLPGEAPLPTYNLMLPHSQCPHCGHRIR
AWENIPLLSYVCLRGRCSSCTAPISKRYPLTELACALLSAFIAWHLGFGWPACLLIVLTWGLLAMSLIDTEHQLLPDVLV
LPLLWLGLIVNSFELFVSLHDALWGAVLGYMALWSVFWLFKLITGKDGIGHGDFKLLALLGAWGGWQILPLTILLSSLVG
AVLGVILLKLRDQKTSTPIPFGPYLAIAGWIALLWGGQITGFYWQFVGLK
Nucleotide
Download Length: 873 bp
>NTDB_id=627766 LOY31_RS24720 WP_258712318.1 5506169..5507041(+) (pilD) [Pseudomonas sp. B21-021]
ATGCCTATCGACGAACTCTTCAGCCTCTATCCGCTGGCCTTTGTTTTCACCGCCCTGCTGCTGGGGCTGGTGGTCGGCAG
TTTCCTCAACGTGTTGATCTGGCGCCTGCCGAAAATGCTCGAGCGGGAATGGCGCCAGCAGGCTCACGATGTGTTGGGGC
TGCCCGGTGAAGCGCCGTTGCCCACCTACAACCTGATGCTGCCGCACTCGCAATGCCCGCACTGTGGCCACCGGATCCGC
GCGTGGGAAAACATTCCCCTGTTGAGTTACGTGTGCCTGCGCGGGCGCTGTTCAAGTTGCACCGCACCGATCAGCAAGCG
TTACCCGCTGACCGAACTGGCCTGCGCTCTGCTCTCGGCGTTCATCGCCTGGCACCTGGGTTTCGGCTGGCCGGCGTGCC
TGTTGATCGTGCTGACCTGGGGCCTGTTGGCCATGAGCCTGATCGACACCGAACATCAATTGCTGCCCGACGTGCTGGTG
CTGCCGCTGCTGTGGCTGGGGCTGATCGTCAACAGCTTCGAGTTGTTCGTGTCACTGCACGACGCCCTGTGGGGCGCGGT
GCTGGGTTACATGGCGCTGTGGTCGGTGTTCTGGCTGTTCAAACTGATCACCGGCAAGGACGGCATCGGTCACGGCGATT
TCAAGCTGCTGGCGCTGCTCGGGGCCTGGGGCGGCTGGCAGATTCTGCCGCTGACCATCCTGTTGTCGTCACTGGTGGGC
GCCGTGCTCGGGGTGATTTTGCTCAAGCTGCGTGACCAGAAAACCTCGACGCCGATCCCCTTCGGCCCGTATCTGGCAAT
TGCCGGCTGGATTGCCTTGCTCTGGGGTGGTCAAATAACCGGCTTCTATTGGCAGTTTGTCGGTTTGAAATGA
ATGCCTATCGACGAACTCTTCAGCCTCTATCCGCTGGCCTTTGTTTTCACCGCCCTGCTGCTGGGGCTGGTGGTCGGCAG
TTTCCTCAACGTGTTGATCTGGCGCCTGCCGAAAATGCTCGAGCGGGAATGGCGCCAGCAGGCTCACGATGTGTTGGGGC
TGCCCGGTGAAGCGCCGTTGCCCACCTACAACCTGATGCTGCCGCACTCGCAATGCCCGCACTGTGGCCACCGGATCCGC
GCGTGGGAAAACATTCCCCTGTTGAGTTACGTGTGCCTGCGCGGGCGCTGTTCAAGTTGCACCGCACCGATCAGCAAGCG
TTACCCGCTGACCGAACTGGCCTGCGCTCTGCTCTCGGCGTTCATCGCCTGGCACCTGGGTTTCGGCTGGCCGGCGTGCC
TGTTGATCGTGCTGACCTGGGGCCTGTTGGCCATGAGCCTGATCGACACCGAACATCAATTGCTGCCCGACGTGCTGGTG
CTGCCGCTGCTGTGGCTGGGGCTGATCGTCAACAGCTTCGAGTTGTTCGTGTCACTGCACGACGCCCTGTGGGGCGCGGT
GCTGGGTTACATGGCGCTGTGGTCGGTGTTCTGGCTGTTCAAACTGATCACCGGCAAGGACGGCATCGGTCACGGCGATT
TCAAGCTGCTGGCGCTGCTCGGGGCCTGGGGCGGCTGGCAGATTCTGCCGCTGACCATCCTGTTGTCGTCACTGGTGGGC
GCCGTGCTCGGGGTGATTTTGCTCAAGCTGCGTGACCAGAAAACCTCGACGCCGATCCCCTTCGGCCCGTATCTGGCAAT
TGCCGGCTGGATTGCCTTGCTCTGGGGTGGTCAAATAACCGGCTTCTATTGGCAGTTTGTCGGTTTGAAATGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilD | Vibrio cholerae strain A1552 |
53.191 |
97.241 |
0.517 |
| pilD | Vibrio campbellii strain DS40M4 |
51.773 |
97.241 |
0.503 |
| pilD | Acinetobacter baumannii D1279779 |
48.175 |
94.483 |
0.455 |
| pilD | Acinetobacter nosocomialis M2 |
48.175 |
94.483 |
0.455 |
| pilD | Neisseria gonorrhoeae MS11 |
46.667 |
93.103 |
0.434 |