Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   LOY45_RS01360 Genome accession   NZ_CP087191
Coordinates   300949..302190 (+) Length   413 a.a.
NCBI ID   WP_258578654.1    Uniprot ID   -
Organism   Pseudomonas wadenswilerensis strain B21-022     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 295949..307190
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LOY45_RS01345 (LOY45_01345) - 296363..298816 (-) 2454 WP_167458922.1 penicillin-binding protein 1A -
  LOY45_RS01350 (LOY45_01350) pilM 298952..300073 (+) 1122 WP_258578652.1 pilus assembly protein PilM -
  LOY45_RS01355 (LOY45_01355) - 300121..300924 (+) 804 WP_258578653.1 pilus assembly protein PilP -
  LOY45_RS01360 (LOY45_01360) pilQ 300949..302190 (+) 1242 WP_258578654.1 type IV pilus secretin PilQ Machinery gene
  LOY45_RS01365 (LOY45_01365) aroK 302195..302713 (+) 519 WP_115089385.1 shikimate kinase AroK -
  LOY45_RS01370 (LOY45_01370) aroB 302813..303910 (+) 1098 WP_258578655.1 3-dehydroquinate synthase -
  LOY45_RS01375 (LOY45_01375) - 303927..305531 (+) 1605 WP_115089380.1 SPOR domain-containing protein -

Sequence

Protein


Download         Length: 413 a.a.        Molecular weight: 44300.76 Da        Isoelectric Point: 5.5123

>NTDB_id=627726 LOY45_RS01360 WP_258578654.1 300949..302190(+) (pilQ) [Pseudomonas wadenswilerensis strain B21-022]
MGKGGVVAALIGSCLSAGAFAGKQLYGGEPLSLNFQDVEVRTVLQVLADFSGVNLVASDAVQGKVTLRLQDVPWDHALDL
VLRSKGLEQRKDGNVLLVAPLAELAGSVPARRELIPIHHAKATDIAELFHALMAHEAGGASHGSLSVDERTNTLVASQPP
ERLEELRRLIGELDVPVRQVMIEARIVEANVDFEKSLGVRWGGAVQVGKGLSLGSAETFVDLGVDRAAASIGVGLVRNNV
LLDLELSAMEKTGNGEVISQPKVVTADKETARILKGTEVPYQETSGSGATSVTFREASLSLEVTPQITPDNRVIMAVKVT
KDEPDYLNALDHVPAIRKNEVNAKVRINDGETIVIGGVYSTVQSKVVDKVPFFGDVPYVGRLFRRDVLQEKKSELLVFLT
PRIMSDQAIAVSR

Nucleotide


Download         Length: 1242 bp        

>NTDB_id=627726 LOY45_RS01360 WP_258578654.1 300949..302190(+) (pilQ) [Pseudomonas wadenswilerensis strain B21-022]
ATGGGCAAGGGAGGTGTTGTTGCCGCGCTGATAGGGAGCTGCCTGTCTGCCGGTGCGTTTGCGGGGAAGCAGCTGTACGG
CGGTGAGCCGCTGTCGTTGAATTTCCAGGATGTCGAGGTACGCACGGTGTTGCAGGTGCTGGCTGACTTTTCTGGGGTCA
ACCTGGTGGCCAGTGATGCGGTGCAGGGCAAGGTGACTTTGCGTTTGCAGGATGTGCCCTGGGATCACGCGTTGGACCTG
GTGCTGCGCAGCAAGGGCCTGGAGCAACGCAAGGACGGTAATGTGCTGTTGGTCGCGCCGCTTGCCGAGCTGGCCGGATC
AGTGCCGGCACGGCGCGAGCTGATCCCGATTCACCACGCCAAGGCCACTGATATTGCCGAGCTTTTCCATGCCCTGATGG
CCCATGAGGCCGGGGGCGCCAGCCACGGCTCGCTGAGTGTCGACGAGCGCACCAACACCCTGGTCGCCAGCCAGCCGCCG
GAGCGCCTGGAAGAGCTGCGCAGGCTGATCGGCGAACTGGACGTGCCGGTTCGTCAGGTGATGATCGAAGCACGCATCGT
CGAGGCCAATGTCGATTTCGAGAAGAGTCTTGGGGTGCGCTGGGGTGGGGCTGTGCAGGTGGGCAAGGGCTTGAGCCTTG
GCAGCGCCGAGACTTTTGTCGACCTCGGTGTCGATCGGGCGGCGGCTAGCATCGGGGTTGGCCTGGTGCGCAATAACGTA
TTGCTCGATCTGGAACTCAGCGCCATGGAAAAGACCGGCAACGGCGAAGTCATCTCCCAGCCCAAGGTGGTTACCGCCGA
CAAGGAAACCGCGCGGATCCTCAAGGGCACCGAAGTGCCGTACCAGGAAACCAGCGGCAGCGGTGCCACGTCCGTGACCT
TCCGCGAGGCGTCGCTGTCTCTTGAGGTGACCCCGCAGATTACCCCGGACAACCGGGTGATCATGGCGGTCAAGGTGACC
AAGGACGAGCCCGACTACCTCAATGCCCTTGATCACGTGCCGGCGATCCGCAAGAACGAGGTCAACGCCAAGGTACGCAT
CAATGATGGCGAGACCATCGTGATCGGCGGCGTGTACTCGACGGTGCAAAGTAAAGTTGTCGACAAGGTGCCATTTTTCG
GCGATGTGCCGTATGTTGGGCGGCTGTTTCGTCGCGATGTTCTACAAGAGAAAAAATCCGAGCTGCTGGTCTTCTTGACT
CCGCGTATCATGAGTGACCAGGCGATTGCTGTGAGTCGTTGA

Domains

Predicted by InterproScan.

Bacterial type II and III secretion system protein (Secretin)

(248-404)

Bacterial type II/III secretion system short domain (Secretin_N)

(114-179)

Secretin and TonB N terminus short domain (STN)

(54-100)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Pseudomonas aeruginosa PAK

59.404

100

0.627
  pilQ Acinetobacter baumannii strain A118

40.741

100

0.453
  pilQ Acinetobacter baumannii D1279779

40.741

100

0.453
  comQ Acinetobacter baylyi ADP1

41.425

100

0.45
  pilQ Legionella pneumophila strain ERS1305867

42.993

100

0.438
  pilQ Legionella pneumophila strain Lp02

42.993

100

0.438
  pilQ Vibrio cholerae O1 biovar El Tor strain E7946

42.518

100

0.433
  pilQ Vibrio cholerae strain A1552

42.518

100

0.433
  pilQ Vibrio campbellii strain DS40M4

41.412

100

0.426
  pilQ Neisseria meningitidis MC58

36.449

100

0.378
  pilQ Neisseria meningitidis M1080

36.364

100

0.378
  pilQ Neisseria gonorrhoeae strain FA1090

36.215

100

0.375