Detailed information
Bioinformatically predicted
Overview
| Name | pilQ | Type | Machinery gene |
| Locus tag | LOY22_RS01385 | Genome accession | NZ_CP087179 |
| Coordinates | 310079..311320 (+) | Length | 413 a.a. |
| NCBI ID | WP_093377169.1 | Uniprot ID | - |
| Organism | Pseudomonas sp. B21-035 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 305079..316320
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LOY22_RS01370 (LOY22_01370) | - | 305532..307985 (-) | 2454 | WP_177329133.1 | penicillin-binding protein 1A | - |
| LOY22_RS01375 (LOY22_01375) | pilM | 308121..309203 (+) | 1083 | WP_093377178.1 | pilus assembly protein PilM | - |
| LOY22_RS01380 (LOY22_01380) | - | 309200..310054 (+) | 855 | WP_093377173.1 | pilus assembly protein PilP | - |
| LOY22_RS01385 (LOY22_01385) | pilQ | 310079..311320 (+) | 1242 | WP_093377169.1 | type IV pilus secretin PilQ | Machinery gene |
| LOY22_RS01390 (LOY22_01390) | aroK | 311325..311843 (+) | 519 | WP_010222231.1 | shikimate kinase AroK | - |
| LOY22_RS01395 (LOY22_01395) | aroB | 311943..313040 (+) | 1098 | WP_010222232.1 | 3-dehydroquinate synthase | - |
| LOY22_RS01400 (LOY22_01400) | - | 313057..314652 (+) | 1596 | WP_093377160.1 | SPOR domain-containing protein | - |
Sequence
Protein
Download Length: 413 a.a. Molecular weight: 44438.74 Da Isoelectric Point: 5.3465
>NTDB_id=627425 LOY22_RS01385 WP_093377169.1 310079..311320(+) (pilQ) [Pseudomonas sp. B21-035]
MGKGAVVGALIGCCLSAGAFAGKQQYGGEPLSLNFQDVEVRTVLQVLADFSGVNLVASDAVQGKVTLRLQDVPWDQALEL
VLRSKGLEQRKDGNVLLVAPLAELAGSAPSRRELIPIHHARATDIAELFHSLMAHEAGGASHGSLSVDERTNTLVASQSP
ERLEELRRLIGELDVPVRQVMIEARIVEANVDFEKSLGVRWGGQVQLGKGLSLGGGDTFVDLGADRASSSIGFGLVRNSA
LLDLELSAMERTGNGEIISQPKVVTADKETARILKGTEVPYQETSGSGATSVTFREASLSLEVTPQITPDNRVIMVVKVT
KDEPDYLNALDHVPAIRKNEVNAKVRINDGETIVIGGVYSTVQSKVVDKVPFFGDVPYVGRLFRRDVLQEKKSELLVFLT
PRIMSDQAIAVSR
MGKGAVVGALIGCCLSAGAFAGKQQYGGEPLSLNFQDVEVRTVLQVLADFSGVNLVASDAVQGKVTLRLQDVPWDQALEL
VLRSKGLEQRKDGNVLLVAPLAELAGSAPSRRELIPIHHARATDIAELFHSLMAHEAGGASHGSLSVDERTNTLVASQSP
ERLEELRRLIGELDVPVRQVMIEARIVEANVDFEKSLGVRWGGQVQLGKGLSLGGGDTFVDLGADRASSSIGFGLVRNSA
LLDLELSAMERTGNGEIISQPKVVTADKETARILKGTEVPYQETSGSGATSVTFREASLSLEVTPQITPDNRVIMVVKVT
KDEPDYLNALDHVPAIRKNEVNAKVRINDGETIVIGGVYSTVQSKVVDKVPFFGDVPYVGRLFRRDVLQEKKSELLVFLT
PRIMSDQAIAVSR
Nucleotide
Download Length: 1242 bp
>NTDB_id=627425 LOY22_RS01385 WP_093377169.1 310079..311320(+) (pilQ) [Pseudomonas sp. B21-035]
ATGGGCAAGGGGGCTGTGGTTGGGGCGCTGATAGGCTGTTGCCTGTCTGCCGGCGCGTTTGCGGGCAAGCAACAGTACGG
CGGTGAGCCGTTGTCATTGAATTTTCAGGATGTCGAGGTGCGTACGGTACTGCAGGTGCTGGCTGATTTTTCCGGGGTCA
ACCTGGTGGCCAGTGATGCGGTGCAGGGCAAGGTGACCTTGCGCTTGCAGGATGTGCCCTGGGACCAGGCGCTGGAGCTG
GTGCTGCGCAGCAAGGGCCTGGAGCAGCGCAAGGATGGCAATGTATTGCTGGTCGCACCGCTTGCCGAACTGGCCGGGTC
CGCGCCGTCGCGGCGCGAGCTGATACCGATCCACCACGCCAGGGCCACCGATATCGCCGAGCTTTTCCACAGCCTGATGG
CCCATGAGGCCGGCGGCGCCAGCCATGGTTCGCTGAGTGTCGATGAGCGCACCAACACCCTGGTCGCCAGCCAGTCGCCG
GAACGTCTGGAAGAGCTGCGCAGGTTGATCGGCGAACTCGATGTGCCGGTACGCCAGGTCATGATCGAGGCGCGGATCGT
CGAGGCCAACGTCGATTTTGAAAAGAGCCTGGGTGTGCGCTGGGGTGGCCAGGTGCAGTTGGGCAAGGGCTTGAGCCTGG
GTGGTGGCGATACCTTCGTCGACCTTGGCGCGGACCGGGCATCGTCGAGTATCGGCTTTGGCCTAGTGCGCAACAGTGCG
CTGCTCGACCTGGAACTGAGCGCCATGGAGCGCACCGGCAACGGCGAAATCATTTCCCAGCCCAAGGTCGTCACCGCTGA
CAAGGAAACTGCGCGGATCCTCAAGGGCACCGAGGTGCCGTATCAGGAAACCAGCGGCAGCGGCGCTACCTCGGTGACCT
TCCGCGAGGCCTCGCTGTCCCTTGAGGTCACCCCGCAGATCACCCCGGACAACCGGGTAATCATGGTGGTCAAGGTGACC
AAGGACGAGCCCGACTACCTCAACGCCCTGGATCACGTGCCGGCGATCCGTAAAAACGAGGTCAACGCCAAGGTGCGTAT
CAATGATGGCGAGACCATCGTCATCGGCGGAGTGTACTCGACGGTGCAAAGTAAAGTTGTCGACAAGGTGCCATTTTTCG
GCGATGTGCCGTATGTTGGGCGGCTGTTTCGTCGCGATGTTCTACAAGAGAAAAAATCCGAGCTGCTGGTCTTCCTGACT
CCGCGTATCATGAGTGACCAGGCGATTGCTGTGAGTCGTTGA
ATGGGCAAGGGGGCTGTGGTTGGGGCGCTGATAGGCTGTTGCCTGTCTGCCGGCGCGTTTGCGGGCAAGCAACAGTACGG
CGGTGAGCCGTTGTCATTGAATTTTCAGGATGTCGAGGTGCGTACGGTACTGCAGGTGCTGGCTGATTTTTCCGGGGTCA
ACCTGGTGGCCAGTGATGCGGTGCAGGGCAAGGTGACCTTGCGCTTGCAGGATGTGCCCTGGGACCAGGCGCTGGAGCTG
GTGCTGCGCAGCAAGGGCCTGGAGCAGCGCAAGGATGGCAATGTATTGCTGGTCGCACCGCTTGCCGAACTGGCCGGGTC
CGCGCCGTCGCGGCGCGAGCTGATACCGATCCACCACGCCAGGGCCACCGATATCGCCGAGCTTTTCCACAGCCTGATGG
CCCATGAGGCCGGCGGCGCCAGCCATGGTTCGCTGAGTGTCGATGAGCGCACCAACACCCTGGTCGCCAGCCAGTCGCCG
GAACGTCTGGAAGAGCTGCGCAGGTTGATCGGCGAACTCGATGTGCCGGTACGCCAGGTCATGATCGAGGCGCGGATCGT
CGAGGCCAACGTCGATTTTGAAAAGAGCCTGGGTGTGCGCTGGGGTGGCCAGGTGCAGTTGGGCAAGGGCTTGAGCCTGG
GTGGTGGCGATACCTTCGTCGACCTTGGCGCGGACCGGGCATCGTCGAGTATCGGCTTTGGCCTAGTGCGCAACAGTGCG
CTGCTCGACCTGGAACTGAGCGCCATGGAGCGCACCGGCAACGGCGAAATCATTTCCCAGCCCAAGGTCGTCACCGCTGA
CAAGGAAACTGCGCGGATCCTCAAGGGCACCGAGGTGCCGTATCAGGAAACCAGCGGCAGCGGCGCTACCTCGGTGACCT
TCCGCGAGGCCTCGCTGTCCCTTGAGGTCACCCCGCAGATCACCCCGGACAACCGGGTAATCATGGTGGTCAAGGTGACC
AAGGACGAGCCCGACTACCTCAACGCCCTGGATCACGTGCCGGCGATCCGTAAAAACGAGGTCAACGCCAAGGTGCGTAT
CAATGATGGCGAGACCATCGTCATCGGCGGAGTGTACTCGACGGTGCAAAGTAAAGTTGTCGACAAGGTGCCATTTTTCG
GCGATGTGCCGTATGTTGGGCGGCTGTTTCGTCGCGATGTTCTACAAGAGAAAAAATCCGAGCTGCTGGTCTTCCTGACT
CCGCGTATCATGAGTGACCAGGCGATTGCTGTGAGTCGTTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilQ | Pseudomonas aeruginosa PAK |
59.633 |
100 |
0.63 |
| pilQ | Acinetobacter baumannii strain A118 |
40.523 |
100 |
0.45 |
| pilQ | Acinetobacter baumannii D1279779 |
40.523 |
100 |
0.45 |
| comQ | Acinetobacter baylyi ADP1 |
41.425 |
100 |
0.45 |
| pilQ | Legionella pneumophila strain Lp02 |
42.043 |
100 |
0.429 |
| pilQ | Legionella pneumophila strain ERS1305867 |
42.043 |
100 |
0.429 |
| pilQ | Vibrio cholerae O1 biovar El Tor strain E7946 |
41.647 |
100 |
0.429 |
| pilQ | Vibrio cholerae strain A1552 |
41.647 |
100 |
0.429 |
| pilQ | Vibrio campbellii strain DS40M4 |
41.371 |
100 |
0.424 |
| pilQ | Neisseria meningitidis MC58 |
37.011 |
100 |
0.39 |
| pilQ | Neisseria gonorrhoeae strain FA1090 |
36.916 |
100 |
0.383 |
| pilQ | Neisseria meningitidis M1080 |
36.449 |
100 |
0.378 |