Detailed information NTG0627296

Bioinformatically predicted

Overview

• Name: pilQ
• Type: Machinery gene
• Locus tag: LOY32_RS01385
• Genome accession: NZ_CP087174
• Coordinates: 304774..306015 (+)
• Length: 413 a.a.
• NCBI ID: WP_254468416.1
• Uniprot ID: -
• Organism: Pseudomonas donghuensis strain B21-042
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 299774..311015

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LOY32_RS01370 (LOY32_01370)	-	300192..302645 (-)	2454	WP_374045261.1	penicillin-binding protein 1A	-
LOY32_RS01375 (LOY32_01375)	pilM	302654..303901 (+)	1248	WP_258694075.1	pilus assembly protein PilM	-
LOY32_RS01380 (LOY32_01380)	-	303898..304749 (+)	852	WP_036995402.1	pilus assembly protein PilP	-
LOY32_RS01385 (LOY32_01385)	pilQ	304774..306015 (+)	1242	WP_254468416.1	type IV pilus secretin PilQ	Machinery gene
LOY32_RS01390 (LOY32_01390)	aroK	306020..306538 (+)	519	WP_010222231.1	shikimate kinase AroK	-
LOY32_RS01395 (LOY32_01395)	aroB	306637..307734 (+)	1098	WP_010222232.1	3-dehydroquinate synthase	-
LOY32_RS01400 (LOY32_01400)	-	307751..309373 (+)	1623	WP_213570338.1	AAA family ATPase	-

Sequence

Protein

• Length: 413 a.a.
• Molecular weight: 44316.81 Da
• Isoelectric Point: 5.5289

>NTDB_id=627296 LOY32_RS01385 WP_254468416.1 304774..306015(+) (pilQ) [Pseudomonas donghuensis strain B21-042]
MGKGGVIAALIGGCLFAGVVAGKQLYGGEPLSLNFQDVEVRTVLQVLADFSGVNLVASDAVQGKVTLRLQDVPWDQALDL
VLRSKGLEQRKDGNVLLVAPRAELAGSAPSRRELIPIHHAKAADIAELFHALMAHEAGGASHGSLSVDERTNTLVASQPP
ERLEELRRLIGELDVPVRQVMIEARIVEANVDFEKALGVRWGGAVQVGKGLSLGSADTFVDLGVDRAASSIGVGLVRNNV
LLDLELSAMEKTGNGEIISQPKVVTADKETARILKGTEVPYQETSGSGATSVTFREASLSLEVTPQITPDNRVIMAVKVT
KDEPDYLNALDHVPAIRKNEVNAKVRINDGETIVIGGVYSTVQSKVVDKVPFFGDVPYVGRLFRRDVLQEKKSELLVFLT
PRIMSDQAIAVSR

Nucleotide

• Length: 1242 bp

>NTDB_id=627296 LOY32_RS01385 WP_254468416.1 304774..306015(+) (pilQ) [Pseudomonas donghuensis strain B21-042]
ATGGGCAAGGGAGGTGTTATTGCAGCGCTGATAGGGGGCTGTCTGTTTGCCGGCGTCGTTGCGGGGAAGCAGCTGTATGG
TGGCGAGCCGCTGTCGCTTAATTTCCAGGATGTCGAGGTACGTACGGTATTGCAGGTGCTGGCCGACTTTTCCGGGGTCA
ACCTGGTGGCCAGTGACGCGGTTCAAGGCAAGGTGACCTTGCGTTTGCAGGATGTGCCCTGGGACCAGGCGTTGGATCTG
GTACTGCGCAGCAAGGGCCTGGAGCAGCGCAAGGACGGCAATGTGCTGCTGGTCGCACCGCGTGCCGAGCTGGCCGGTTC
AGCGCCGTCGCGGCGCGAGCTGATCCCGATCCATCATGCCAAGGCCGCCGATATCGCCGAGTTGTTCCACGCCCTGATGG
CCCATGAGGCCGGGGGCGCCAGCCACGGTTCGCTGAGTGTCGACGAGCGCACCAATACCCTGGTCGCCAGCCAGCCGCCA
GAGCGTCTGGAAGAGCTGCGCAGGCTGATCGGCGAACTGGATGTACCGGTTCGTCAGGTGATGATCGAGGCGCGGATTGT
CGAGGCCAATGTCGATTTCGAAAAGGCCCTGGGGGTGCGTTGGGGTGGCGCCGTGCAGGTGGGCAAGGGTTTGAGCCTCG
GCAGCGCCGATACCTTTGTCGATCTTGGCGTGGATCGGGCCGCGTCCAGCATCGGCGTGGGCCTGGTGCGCAACAACGTA
CTGCTCGACCTGGAGCTCAGCGCCATGGAAAAGACCGGCAATGGCGAGATCATCTCCCAGCCCAAGGTGGTTACCGCCGA
CAAGGAAACCGCGCGGATCCTCAAGGGCACCGAGGTGCCGTATCAGGAAACCAGCGGCAGCGGCGCCACGTCCGTGACCT
TCCGTGAGGCATCGCTGTCTCTGGAGGTGACCCCGCAGATCACCCCGGACAACCGGGTGATCATGGCGGTCAAGGTGACC
AAGGACGAGCCCGACTACCTCAATGCCCTTGATCACGTGCCGGCGATCCGCAAGAACGAGGTCAACGCCAAGGTGCGCAT
CAATGATGGCGAGACCATCGTGATCGGCGGCGTGTACTCGACGGTGCAAAGTAAAGTTGTCGACAAGGTGCCATTTTTCG
GCGATGTGCCGTATGTTGGGCGGCTGTTTCGTCGCGATGTTCTACAAGAGAAAAAATCCGAGCTGCTGGTCTTCCTGACT
CCGCGTATCATGAGTGACCAGGCGATTGCTGTGAGTCGTTGA

Domains

Predicted by InterproScan.

• Bacterial type II/III secretion system short domain (Secretin_N) (114-179)

• Secretin and TonB N terminus short domain (STN) (54-100)

• Bacterial type II and III secretion system protein (Secretin) (248-404)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilQ	Pseudomonas aeruginosa PAK	60.321	100	0.637
comQ	Acinetobacter baylyi ADP1	42.539	100	0.462
pilQ	Acinetobacter baumannii strain A118	40.741	100	0.453
pilQ	Acinetobacter baumannii D1279779	40.741	100	0.453
pilQ	Legionella pneumophila strain Lp02	43.23	100	0.441
pilQ	Legionella pneumophila strain ERS1305867	43.23	100	0.441
pilQ	Vibrio campbellii strain DS40M4	42.118	100	0.433
pilQ	Vibrio cholerae O1 biovar El Tor strain E7946	42.584	100	0.431
pilQ	Vibrio cholerae strain A1552	42.584	100	0.431
pilQ	Neisseria meningitidis M1080	36.534	100	0.378
pilQ	Neisseria meningitidis MC58	36.15	100	0.373
pilQ	Neisseria gonorrhoeae strain FA1090	36.15	100	0.373