Detailed information NTG0627272

Bioinformatically predicted

Overview

• Name: pilQ
• Type: Machinery gene
• Locus tag: LOY30_RS01365
• Genome accession: NZ_CP087173
• Coordinates: 305113..306354 (+)
• Length: 413 a.a.
• NCBI ID: WP_232531789.1
• Uniprot ID: -
• Organism: Pseudomonas donghuensis strain B21-043
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 300113..311354

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LOY30_RS01350 (LOY30_01350)	-	300531..302984 (-)	2454	WP_374045261.1	penicillin-binding protein 1A	-
LOY30_RS01355 (LOY30_01355)	pilM	302993..304240 (+)	1248	WP_258702225.1	pilus assembly protein PilM	-
LOY30_RS01360 (LOY30_01360)	-	304237..305088 (+)	852	WP_258702226.1	pilus assembly protein PilP	-
LOY30_RS01365 (LOY30_01365)	pilQ	305113..306354 (+)	1242	WP_232531789.1	type IV pilus secretin PilQ	Machinery gene
LOY30_RS01370 (LOY30_01370)	aroK	306359..306877 (+)	519	WP_010222231.1	shikimate kinase AroK	-
LOY30_RS01375 (LOY30_01375)	aroB	306976..308073 (+)	1098	WP_010222232.1	3-dehydroquinate synthase	-
LOY30_RS01380 (LOY30_01380)	-	308090..309712 (+)	1623	WP_213570338.1	AAA family ATPase	-

Sequence

Protein

• Length: 413 a.a.
• Molecular weight: 44399.88 Da
• Isoelectric Point: 5.5291

>NTDB_id=627272 LOY30_RS01365 WP_232531789.1 305113..306354(+) (pilQ) [Pseudomonas donghuensis strain B21-043]
MGKGGVIAALIGGWLFAGVVAGKQLYGGEPLSLNFQDVEVRTVLQVLADFSGVNLVASDAVQGKVTLRLQDVPWDQALDL
VLRSKGLEQRKDGNVLLVAPRAELAGSAPSRRELIPIHHAKAADIAELFHALMAHEAGGASHGSLSVDERTNTLVASQPP
ERLEELRRLIGELDVPVRQVMIEARIVEANVDFEKALGVRWGGAVQVGKGLSLGSADTFVDLGVDRAASSIGVGLVRNNV
LLDLELSAMEKTGNGEIISQPKVVTADKETARILKGTEVPYQETSGSGATSVTFREASLSLEVTPQITPDNRVIMAVKVT
KDEPDYLNALDHVPAIRKNEVNAKVRINDGETIVIGGVYSTVQSKVVDKVPFFGDVPYVGRLFRRDVLQEKKSELLVFLT
PRIMSDQAIAVSR

Nucleotide

• Length: 1242 bp

>NTDB_id=627272 LOY30_RS01365 WP_232531789.1 305113..306354(+) (pilQ) [Pseudomonas donghuensis strain B21-043]
ATGGGCAAGGGAGGTGTTATTGCAGCGCTGATAGGGGGCTGGCTGTTTGCCGGCGTCGTTGCGGGGAAGCAGCTGTATGG
TGGCGAGCCGCTGTCGCTTAATTTCCAGGATGTCGAGGTACGTACGGTATTGCAGGTGCTGGCCGACTTTTCCGGGGTCA
ACCTGGTGGCCAGTGACGCGGTTCAAGGCAAGGTGACCTTGCGTTTGCAGGATGTGCCCTGGGACCAGGCGTTGGATCTG
GTACTGCGCAGCAAGGGCCTGGAGCAGCGCAAGGACGGCAATGTGCTGCTGGTCGCACCGCGTGCCGAGCTGGCCGGTTC
AGCGCCGTCGCGGCGCGAGCTGATCCCGATCCATCATGCCAAGGCCGCCGATATCGCCGAGTTGTTCCACGCCCTGATGG
CCCATGAGGCCGGGGGCGCCAGCCACGGTTCGCTGAGTGTCGACGAGCGCACCAATACCCTGGTCGCCAGCCAGCCGCCA
GAGCGTCTGGAAGAGCTGCGCAGGCTGATCGGCGAACTGGATGTACCGGTTCGTCAGGTGATGATCGAGGCGCGGATTGT
CGAGGCCAATGTCGATTTCGAAAAGGCCCTGGGGGTGCGTTGGGGTGGCGCCGTGCAGGTGGGCAAGGGTTTGAGCCTCG
GCAGCGCCGATACCTTTGTCGATCTTGGCGTGGATCGGGCCGCGTCCAGCATCGGCGTGGGCCTGGTGCGCAACAACGTA
CTGCTCGACCTGGAGCTCAGCGCCATGGAAAAGACCGGCAATGGCGAGATCATCTCCCAGCCCAAGGTGGTTACCGCCGA
CAAGGAAACCGCGCGGATCCTCAAGGGCACCGAGGTGCCGTATCAGGAAACCAGCGGCAGCGGCGCCACGTCCGTGACCT
TCCGTGAGGCATCGCTGTCTCTGGAGGTGACCCCGCAGATCACCCCGGACAACCGGGTGATCATGGCGGTCAAGGTGACC
AAGGACGAGCCCGACTACCTCAATGCCCTTGATCACGTGCCGGCGATCCGCAAGAACGAGGTCAACGCCAAGGTGCGCAT
CAATGATGGCGAGACCATCGTGATCGGCGGCGTGTACTCGACGGTGCAAAGTAAAGTTGTCGACAAGGTGCCATTTTTCG
GCGATGTGCCGTATGTTGGGCGGCTGTTTCGTCGCGATGTTCTACAAGAGAAAAAATCCGAGCTGCTGGTCTTCCTGACT
CCGCGTATCATGAGTGACCAGGCGATTGCTGTGAGTCGTTGA

Domains

Predicted by InterproScan.

• Bacterial type II/III secretion system short domain (Secretin_N) (114-179)

• Secretin and TonB N terminus short domain (STN) (54-100)

• Bacterial type II and III secretion system protein (Secretin) (248-404)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilQ	Pseudomonas aeruginosa PAK	60.321	100	0.637
comQ	Acinetobacter baylyi ADP1	42.539	100	0.462
pilQ	Acinetobacter baumannii strain A118	40.741	100	0.453
pilQ	Acinetobacter baumannii D1279779	40.741	100	0.453
pilQ	Legionella pneumophila strain Lp02	43.23	100	0.441
pilQ	Legionella pneumophila strain ERS1305867	43.23	100	0.441
pilQ	Vibrio campbellii strain DS40M4	42.118	100	0.433
pilQ	Vibrio cholerae O1 biovar El Tor strain E7946	41.866	100	0.424
pilQ	Vibrio cholerae strain A1552	41.866	100	0.424
pilQ	Neisseria meningitidis M1080	36.534	100	0.378
pilQ	Neisseria meningitidis MC58	36.15	100	0.373
pilQ	Neisseria gonorrhoeae strain FA1090	36.15	100	0.373