Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   LOY56_RS22405 Genome accession   NZ_CP087168
Coordinates   4791550..4792767 (+) Length   405 a.a.
NCBI ID   WP_258617157.1    Uniprot ID   -
Organism   Pseudomonas sp. B21-048     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4786550..4797767
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LOY56_RS22385 (LOY56_22335) - 4788047..4788337 (+) 291 WP_258617153.1 DUF2845 domain-containing protein -
  LOY56_RS22390 (LOY56_22340) - 4788539..4788895 (-) 357 WP_258617154.1 BON domain-containing protein -
  LOY56_RS22395 (LOY56_22345) pilA/pilAI 4789210..4789620 (-) 411 WP_258617155.1 pilin Machinery gene
  LOY56_RS22400 (LOY56_22350) pilB 4789847..4791547 (+) 1701 WP_258617156.1 type IV-A pilus assembly ATPase PilB Machinery gene
  LOY56_RS22405 (LOY56_22355) pilC 4791550..4792767 (+) 1218 WP_258617157.1 type II secretion system F family protein Machinery gene
  LOY56_RS22410 (LOY56_22360) pilD 4792769..4793641 (+) 873 WP_258617158.1 A24 family peptidase Machinery gene
  LOY56_RS22415 (LOY56_22365) coaE 4793638..4794261 (+) 624 WP_258617159.1 dephospho-CoA kinase -
  LOY56_RS22420 (LOY56_22370) yacG 4794258..4794458 (+) 201 WP_258617160.1 DNA gyrase inhibitor YacG -
  LOY56_RS22425 (LOY56_22375) - 4794468..4794683 (-) 216 WP_258617161.1 hypothetical protein -
  LOY56_RS22430 (LOY56_22380) - 4794747..4795436 (-) 690 WP_258617162.1 energy-coupling factor ABC transporter permease -
  LOY56_RS22435 (LOY56_22385) ppk2 4795777..4796601 (+) 825 WP_258622841.1 polyphosphate kinase 2 -

Sequence

Protein


Download         Length: 405 a.a.        Molecular weight: 44140.11 Da        Isoelectric Point: 10.0535

>NTDB_id=627159 LOY56_RS22405 WP_258617157.1 4791550..4792767(+) (pilC) [Pseudomonas sp. B21-048]
MAVKAAKISVYAWEGKDKKGTRMTGELTGQNPALIKAQLRKQGINPGKVRKKTASIFSAGKRIKPLDIALFTRQMATMMK
AGVPLLQSFDIIGEGFDNPNMRKLVDEVKQEVAAGNSFAAALRKKPQYFDELYCNLVDAGEQAGALDTLLERVATYKEKS
ESLKAKIKKAMTYPLAVVFVAIIVTGILLVKVVPQFESVFSGFGAELPAFTVMVIGLSEFMQAWWWMLLGVLAGAFFGVR
HAFKKSPGFRDRMDTWLLKLPLVGALMYKSAVARYARTLSTTFAAGVPLVEALDSVAGATGNIVFKRAVLRIKQDVSTGM
QLNFAMRTSGIFPNMAIQMTAIGEESGALDDMLDKVASFYEAEVDNMVDNLTSLMEPFIMVVLGVIVGGLVVAMYLPIFQ
LGSAI

Nucleotide


Download         Length: 1218 bp        

>NTDB_id=627159 LOY56_RS22405 WP_258617157.1 4791550..4792767(+) (pilC) [Pseudomonas sp. B21-048]
ATGGCGGTCAAAGCAGCGAAAATCAGCGTATATGCCTGGGAAGGCAAAGACAAAAAAGGCACAAGAATGACCGGCGAATT
GACCGGCCAGAATCCCGCGCTGATCAAGGCGCAGTTGCGCAAGCAAGGCATCAACCCGGGCAAGGTTCGAAAAAAAACCG
CGTCCATTTTCAGTGCCGGCAAACGTATCAAGCCCTTGGACATTGCTCTGTTTACCCGGCAGATGGCGACCATGATGAAA
GCCGGCGTACCGTTGCTGCAATCGTTCGACATTATCGGCGAGGGCTTCGACAACCCGAACATGCGCAAGCTGGTGGACGA
GGTGAAACAGGAAGTCGCGGCCGGCAACAGTTTCGCCGCGGCCCTGCGCAAGAAACCCCAGTATTTCGATGAGCTGTACT
GCAACCTGGTGGATGCCGGCGAGCAGGCCGGCGCTCTGGATACGTTGCTGGAACGGGTGGCGACCTACAAGGAAAAGAGC
GAAAGCCTCAAGGCCAAGATCAAGAAAGCCATGACCTACCCACTGGCCGTGGTATTCGTCGCGATCATTGTGACCGGGAT
TCTACTGGTCAAGGTGGTGCCGCAATTCGAGTCGGTGTTCTCCGGGTTTGGTGCCGAGTTGCCGGCATTCACCGTGATGG
TCATCGGCTTGTCGGAGTTCATGCAGGCCTGGTGGTGGATGCTGCTCGGCGTGCTGGCTGGAGCATTCTTCGGCGTGCGT
CACGCCTTTAAAAAGTCCCCGGGCTTTCGTGACCGGATGGACACCTGGCTGCTGAAACTGCCGTTGGTGGGCGCGCTCAT
GTACAAGTCCGCCGTGGCCCGTTACGCCCGCACCTTGTCGACCACATTTGCCGCCGGGGTGCCATTGGTCGAAGCTCTGG
ATTCAGTGGCGGGCGCAACCGGCAATATCGTGTTCAAGCGCGCGGTGTTACGTATCAAGCAGGACGTTTCCACCGGCATG
CAGCTGAATTTTGCCATGCGCACCTCTGGCATCTTTCCGAACATGGCGATTCAGATGACGGCCATTGGCGAAGAGTCCGG
CGCTCTGGACGACATGCTCGACAAGGTCGCGAGTTTCTACGAGGCTGAGGTGGACAACATGGTCGATAACCTGACCAGTC
TGATGGAGCCTTTCATCATGGTGGTGCTGGGGGTTATCGTCGGCGGCCTGGTGGTTGCGATGTACCTGCCCATCTTCCAA
CTTGGCTCAGCGATCTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(276-397)

Type II secretion system (T2SS), protein F (T2SSF)

(71-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

73.827

100

0.738
  pilC Acinetobacter baylyi ADP1

60.049

100

0.605
  pilC Acinetobacter baumannii D1279779

58.088

100

0.585
  pilC Legionella pneumophila strain ERS1305867

54.293

97.778

0.531
  pilG Neisseria gonorrhoeae MS11

42.928

99.506

0.427
  pilG Neisseria meningitidis 44/76-A

42.432

99.506

0.422
  pilC Vibrio cholerae strain A1552

42.424

97.778

0.415
  pilC Vibrio campbellii strain DS40M4

40.64

100

0.407
  pilC Thermus thermophilus HB27

38.653

99.012

0.383