Detailed information NTG0627160

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: LOY56_RS22410
• Genome accession: NZ_CP087168
• Coordinates: 4792769..4793641 (+)
• Length: 290 a.a.
• NCBI ID: WP_258617158.1
• Uniprot ID: -
• Organism: Pseudomonas sp. B21-048
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4787769..4798641

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LOY56_RS22385 (LOY56_22335)	-	4788047..4788337 (+)	291	WP_258617153.1	DUF2845 domain-containing protein	-
LOY56_RS22390 (LOY56_22340)	-	4788539..4788895 (-)	357	WP_258617154.1	BON domain-containing protein	-
LOY56_RS22395 (LOY56_22345)	pilA/pilAI	4789210..4789620 (-)	411	WP_258617155.1	pilin	Machinery gene
LOY56_RS22400 (LOY56_22350)	pilB	4789847..4791547 (+)	1701	WP_258617156.1	type IV-A pilus assembly ATPase PilB	Machinery gene
LOY56_RS22405 (LOY56_22355)	pilC	4791550..4792767 (+)	1218	WP_258617157.1	type II secretion system F family protein	Machinery gene
LOY56_RS22410 (LOY56_22360)	pilD	4792769..4793641 (+)	873	WP_258617158.1	A24 family peptidase	Machinery gene
LOY56_RS22415 (LOY56_22365)	coaE	4793638..4794261 (+)	624	WP_258617159.1	dephospho-CoA kinase	-
LOY56_RS22420 (LOY56_22370)	yacG	4794258..4794458 (+)	201	WP_258617160.1	DNA gyrase inhibitor YacG	-
LOY56_RS22425 (LOY56_22375)	-	4794468..4794683 (-)	216	WP_258617161.1	hypothetical protein	-
LOY56_RS22430 (LOY56_22380)	-	4794747..4795436 (-)	690	WP_258617162.1	energy-coupling factor ABC transporter permease	-
LOY56_RS22435 (LOY56_22385)	ppk2	4795777..4796601 (+)	825	WP_258622841.1	polyphosphate kinase 2	-
LOY56_RS22440 (LOY56_22390)	-	4796651..4798432 (+)	1782	WP_258622842.1	SulP family inorganic anion transporter	-

Sequence

Protein

• Length: 290 a.a.
• Molecular weight: 32129.32 Da
• Isoelectric Point: 7.3244

>NTDB_id=627160 LOY56_RS22410 WP_258617158.1 4792769..4793641(+) (pilD) [Pseudomonas sp. B21-048]
MSLNEFLSLNPLAFTITALVIGLLIGSFLNVVVWRLPKMLEREWRLQAHDVLDLPPEAPGPAYNLILPHSECPDCGHRIR
AWENIPVLSYLFLRGRCSNCAAPISKRYPLTELACGVLSAFVAWHFGFGWQACMVLVLSWGLLAMSLIDAEHQLLPDVLV
LPLIWLGLIVNSFGLFVSLHDALWGAVAGYMALWTVFWLFKLITGKDGIGYGDFKLLAMLGAWGGWQILPMTILLSSLLG
AIIGVILLRLRDAKTSTPLPFGPYLAIAGWIALLWGGQITGFYWQFVGLK

Nucleotide

• Length: 873 bp

>NTDB_id=627160 LOY56_RS22410 WP_258617158.1 4792769..4793641(+) (pilD) [Pseudomonas sp. B21-048]
ATGTCCTTGAACGAATTTCTGAGTCTCAACCCGCTGGCCTTCACGATCACGGCATTGGTGATCGGTTTGCTGATCGGCAG
TTTCCTCAACGTGGTGGTCTGGCGCTTGCCGAAAATGCTTGAGCGTGAATGGCGCCTGCAGGCCCATGACGTACTGGATT
TGCCACCCGAAGCCCCCGGCCCGGCTTACAACCTGATACTTCCTCACTCCGAGTGCCCCGACTGCGGCCATCGGATTCGA
GCGTGGGAAAACATTCCCGTGCTCAGTTACCTGTTTTTACGCGGGCGATGCTCCAACTGTGCGGCGCCGATCAGCAAACG
TTACCCGCTGACCGAACTGGCCTGTGGCGTGCTGTCGGCGTTCGTCGCCTGGCATTTCGGCTTCGGTTGGCAGGCCTGCA
TGGTGCTGGTCCTGAGCTGGGGCCTTTTGGCGATGAGCCTGATCGATGCCGAGCATCAGCTGTTGCCGGACGTGCTGGTG
CTGCCGTTGATATGGTTGGGGTTGATCGTCAACAGCTTCGGGCTCTTCGTCTCACTGCATGATGCGCTCTGGGGTGCGGT
GGCCGGCTACATGGCTTTGTGGACGGTGTTCTGGCTGTTCAAGCTGATCACCGGCAAGGACGGCATTGGCTACGGTGACT
TCAAGCTCTTGGCGATGCTCGGCGCCTGGGGCGGCTGGCAGATACTGCCCATGACCATCCTGCTGTCATCGCTGCTGGGC
GCCATCATCGGGGTGATTTTACTGCGCCTGCGGGACGCGAAAACCTCGACGCCGCTGCCCTTTGGCCCTTATCTGGCGAT
TGCCGGCTGGATTGCCTTGCTCTGGGGTGGTCAAATAACCGGCTTCTATTGGCAGTTTGTCGGTTTGAAATGA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (20-126)

• Type IV leader peptidase family (Peptidase_A24) (136-245)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	51.228	98.276	0.503
pilD	Vibrio campbellii strain DS40M4	51.064	97.241	0.497
pilD	Acinetobacter baumannii D1279779	50.542	95.517	0.483
pilD	Acinetobacter nosocomialis M2	49.819	95.517	0.476
pilD	Neisseria gonorrhoeae MS11	48.148	93.103	0.448