Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   HQN46_RS10580 Genome accession   NZ_CP087103
Coordinates   2046198..2046533 (+) Length   111 a.a.
NCBI ID   WP_000982003.1    Uniprot ID   A0A1X3MTC3
Organism   Bacillus toyonensis strain HA0190     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2041198..2051533
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HQN46_RS10555 (HQN46_0010555) - 2041417..2042220 (-) 804 WP_230075174.1 hypothetical protein -
  HQN46_RS10560 (HQN46_0010560) - 2042330..2042977 (+) 648 WP_000165952.1 HD domain-containing protein -
  HQN46_RS10565 (HQN46_0010565) - 2042974..2044869 (+) 1896 WP_000783190.1 ABC-F family ATP-binding cassette domain-containing protein -
  HQN46_RS10570 (HQN46_0010570) - 2044945..2045676 (+) 732 WP_001260657.1 Bax inhibitor-1/YccA family membrane protein -
  HQN46_RS10575 (HQN46_0010575) - 2045782..2046036 (+) 255 WP_000975117.1 DUF4318 domain-containing protein -
  HQN46_RS10580 (HQN46_0010580) ssbA 2046198..2046533 (+) 336 WP_000982003.1 single-stranded DNA-binding protein Machinery gene
  HQN46_RS10585 (HQN46_0010585) - 2046895..2047284 (+) 390 WP_000940649.1 hypothetical protein -
  HQN46_RS10590 (HQN46_0010590) - 2047828..2048955 (+) 1128 WP_000692599.1 conserved virulence factor C family protein -
  HQN46_RS10595 (HQN46_0010595) - 2048959..2049342 (+) 384 WP_000634893.1 thiol-disulfide oxidoreductase DCC family protein -
  HQN46_RS10600 (HQN46_0010600) - 2049425..2049859 (+) 435 WP_000063715.1 BrxA/BrxB family bacilliredoxin -
  HQN46_RS10605 (HQN46_0010605) - 2049909..2050685 (+) 777 WP_000637474.1 class I SAM-dependent methyltransferase -

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 12721.60 Da        Isoelectric Point: 9.8971

>NTDB_id=626607 HQN46_RS10580 WP_000982003.1 2046198..2046533(+) (ssbA) [Bacillus toyonensis strain HA0190]
MMNRVVLIGRLTKDPELYYTKQGVAYARICVAVNRGFRNSLGEQQADFINCVVWRRAAENVTKYCTKGSLVGITGRIHTN
NYDDEKGKKIYRTEVVIESITFLERRREGAS

Nucleotide


Download         Length: 336 bp        

>NTDB_id=626607 HQN46_RS10580 WP_000982003.1 2046198..2046533(+) (ssbA) [Bacillus toyonensis strain HA0190]
ATGATGAATCGAGTTGTATTAATCGGTAGATTGACAAAGGATCCAGAATTATACTACACAAAACAAGGCGTCGCTTATGC
ACGAATATGTGTTGCAGTGAATAGAGGATTTCGAAATAGTTTAGGTGAACAACAAGCAGATTTTATAAATTGTGTCGTTT
GGCGAAGAGCAGCTGAAAATGTAACAAAATACTGTACGAAGGGATCACTTGTTGGAATTACAGGGCGTATTCATACGAAT
AATTACGATGATGAGAAAGGAAAGAAAATATATAGAACTGAAGTTGTGATTGAGAGTATTACCTTTTTGGAGAGAAGGAG
GGAGGGGGCATCGTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1X3MTC3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

57.547

95.495

0.55
  ssbB Bacillus subtilis subsp. subtilis str. 168

50.893

100

0.514
  ssb Latilactobacillus sakei subsp. sakei 23K

51.887

95.495

0.495
  ssbB Streptococcus sobrinus strain NIDR 6715-7

43.636

99.099

0.432
  ssbB Lactococcus lactis subsp. cremoris KW2

44.762

94.595

0.423
  ssbB/cilA Streptococcus pneumoniae TIGR4

42.727

99.099

0.423
  ssbA Streptococcus mutans UA159

41.818

99.099

0.414
  ssbB/cilA Streptococcus pneumoniae Rx1

41.818

99.099

0.414
  ssbB/cilA Streptococcus pneumoniae D39

41.818

99.099

0.414
  ssbB/cilA Streptococcus pneumoniae R6

41.818

99.099

0.414
  ssbB/cilA Streptococcus mitis SK321

41.818

99.099

0.414
  ssbB/cilA Streptococcus mitis NCTC 12261

40.909

99.099

0.405