Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   NYS59_RS00105 Genome accession   NZ_CP103789
Coordinates   22564..23652 (+) Length   362 a.a.
NCBI ID   WP_128652123.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain 2718     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 17564..28652
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NYS59_RS00085 rsmB 18458..19762 (-) 1305 WP_023108403.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -
  NYS59_RS00090 fmt 19759..20703 (-) 945 WP_023108402.1 methionyl-tRNA formyltransferase -
  NYS59_RS00095 def 20759..21265 (-) 507 WP_003097293.1 peptide deformylase -
  NYS59_RS00100 tsaP 21404..22429 (+) 1026 WP_126559387.1 LysM peptidoglycan-binding domain-containing protein Machinery gene
  NYS59_RS00105 dprA 22564..23652 (+) 1089 WP_128652123.1 DNA-processing protein DprA Machinery gene
  NYS59_RS00110 - 23693..24250 (+) 558 WP_003097300.1 L-threonylcarbamoyladenylate synthase -
  NYS59_RS00115 - 24260..25237 (-) 978 WP_003097303.1 NADPH:quinone reductase -
  NYS59_RS00120 hemF 25428..26345 (+) 918 WP_034028293.1 oxygen-dependent coproporphyrinogen oxidase -
  NYS59_RS00125 aroE 26403..27227 (+) 825 WP_003097314.1 shikimate dehydrogenase -
  NYS59_RS00130 - 27338..28324 (+) 987 WP_003097316.1 phospholipase -

Sequence

Protein


Download         Length: 362 a.a.        Molecular weight: 37719.26 Da        Isoelectric Point: 7.0742

>NTDB_id=625392 NYS59_RS00105 WP_128652123.1 22564..23652(+) (dprA) [Pseudomonas aeruginosa strain 2718]
MKNHSPAELEARLRLHGLPELGPMRFLRLIEAFGSASSALAAPAGAWRTLGVPAEAAAARRSPAVREAAGEALRWLEGPR
RHLMMWDDPGYPALLAEVADAPPLLYVEGAPETLERPQLAMVGSRRASPAGLGTARSFARSLAQGGFAITSGLALGIDGA
AHEGALEVGGATVAVLGTGLRRLYPRRHEALARRIVEGGGALVSELPLDSPPLPANFPRRNRIISGLSLGVLVVEASPAS
GSLITARLAAEQGREVYAIPGSIHHPGARGCHQLIRDGALLVESVGHVLEALRGWAQAEPAEAPAQPLPHPLLALLRAAP
YTSEGLAAASGMTLPDVLATLSELELDGRVACEAGTWVHRSG

Nucleotide


Download         Length: 1089 bp        

>NTDB_id=625392 NYS59_RS00105 WP_128652123.1 22564..23652(+) (dprA) [Pseudomonas aeruginosa strain 2718]
ATGAAGAACCATTCTCCAGCCGAACTGGAAGCACGGCTGCGTCTGCATGGCCTGCCCGAACTGGGACCCATGCGCTTCCT
GCGCTTGATCGAGGCCTTCGGTTCGGCCTCTTCCGCGCTTGCCGCGCCAGCCGGCGCCTGGCGCACCCTGGGAGTGCCTG
CCGAGGCCGCTGCCGCGCGGCGCAGCCCGGCGGTGCGGGAAGCGGCGGGTGAAGCCCTGCGCTGGCTGGAAGGTCCGCGC
AGGCACCTGATGATGTGGGATGACCCGGGATACCCGGCACTGCTCGCCGAAGTCGCCGATGCCCCGCCGCTGCTGTACGT
CGAAGGCGCTCCGGAGACTCTGGAACGGCCGCAACTGGCGATGGTCGGCAGCCGCCGCGCCAGCCCCGCCGGGCTGGGCA
CCGCCCGGAGCTTTGCGCGCAGCCTGGCGCAGGGCGGCTTCGCCATCACCAGCGGGCTGGCCCTGGGAATCGATGGCGCC
GCCCACGAGGGCGCGCTGGAGGTTGGCGGCGCGACCGTGGCAGTCCTCGGCACCGGCCTGCGCAGGCTCTATCCGCGCCG
CCACGAGGCGCTGGCGCGGCGCATCGTCGAGGGTGGCGGCGCGCTGGTTTCGGAACTGCCGCTGGACAGCCCGCCGCTGC
CGGCAAACTTTCCCCGGCGCAACCGCATCATCAGCGGACTCTCGCTGGGTGTGCTGGTGGTCGAGGCAAGTCCCGCCAGC
GGCTCGCTGATCACCGCGCGGCTGGCGGCGGAACAGGGGCGCGAGGTGTACGCCATTCCGGGTTCCATCCACCACCCCGG
CGCACGTGGCTGCCACCAGCTGATTCGCGATGGCGCGCTGCTGGTGGAAAGCGTCGGGCACGTGCTCGAAGCACTGCGCG
GCTGGGCGCAGGCGGAGCCAGCGGAAGCGCCGGCGCAACCCCTGCCCCACCCTTTGCTGGCGCTGCTGCGCGCCGCGCCC
TACACCAGCGAAGGCCTGGCCGCCGCCAGCGGCATGACGCTGCCCGACGTGCTGGCGACGCTCAGCGAACTGGAACTCGA
CGGCCGGGTCGCCTGCGAGGCCGGCACCTGGGTGCATCGCTCCGGCTGA

Domains

Predicted by InterProScan.

DprA winged helix domain (WHD_DprA)

(297-355)

DNA recombination-mediator protein A (DNA_processg_A)

(82-283)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Vibrio cholerae strain A1552

42.781

100

0.442
  dprA Vibrio cholerae O1 biovar El Tor strain E7946

42.781

100

0.442
  dprA Vibrio campbellii strain DS40M4

42.973

100

0.439
  dprA Legionella pneumophila strain ERS1305867

43.099

98.066

0.423
  dprA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

41.69

98.066

0.409
  dprA Acinetobacter baumannii D1279779

37.293

100

0.373
  dprA Neisseria gonorrhoeae strain FA1090

44.554

83.702

0.373
  dprA Neisseria meningitidis MC58

46.048

80.387

0.37
  dprA Neisseria meningitidis strain C311

46.048

80.387

0.37
  dprA Neisseria gonorrhoeae MS11

44.224

83.702

0.37
  dprA Acinetobacter baumannii strain A118

37.892

96.961

0.367
  dprA Glaesserella parasuis strain SC1401

46.503

79.006

0.367