Detailed information    

insolico Bioinformatically predicted

Overview

Name   tsaP   Type   Machinery gene
Locus tag   NYS59_RS00100 Genome accession   NZ_CP103789
Coordinates   21404..22429 (+) Length   341 a.a.
NCBI ID   WP_126559387.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain 2718     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 16404..27429
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NYS59_RS00075 - 16592..16909 (-) 318 WP_003097288.1 tetratricopeptide repeat protein -
  NYS59_RS00080 trkA 17058..18431 (-) 1374 WP_003111375.1 Trk system potassium transporter TrkA -
  NYS59_RS00085 rsmB 18458..19762 (-) 1305 WP_023108403.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -
  NYS59_RS00090 fmt 19759..20703 (-) 945 WP_023108402.1 methionyl-tRNA formyltransferase -
  NYS59_RS00095 def 20759..21265 (-) 507 WP_003097293.1 peptide deformylase -
  NYS59_RS00100 tsaP 21404..22429 (+) 1026 WP_126559387.1 LysM peptidoglycan-binding domain-containing protein Machinery gene
  NYS59_RS00105 dprA 22564..23652 (+) 1089 WP_128652123.1 DNA-processing protein DprA Machinery gene
  NYS59_RS00110 - 23693..24250 (+) 558 WP_003097300.1 L-threonylcarbamoyladenylate synthase -
  NYS59_RS00115 - 24260..25237 (-) 978 WP_003097303.1 NADPH:quinone reductase -
  NYS59_RS00120 hemF 25428..26345 (+) 918 WP_034028293.1 oxygen-dependent coproporphyrinogen oxidase -
  NYS59_RS00125 aroE 26403..27227 (+) 825 WP_003097314.1 shikimate dehydrogenase -

Sequence

Protein


Download         Length: 341 a.a.        Molecular weight: 37614.06 Da        Isoelectric Point: 9.3358

>NTDB_id=625391 NYS59_RS00100 WP_126559387.1 21404..22429(+) (tsaP) [Pseudomonas aeruginosa strain 2718]
MRKSLVALLLLAASGLAQAQVDLREGHPDRYTVVRGDTLWDISGKFLRQPWKWPELWHVNPQIQNPHLIYPGDTLSLVYV
DGQPRLVLNRGESRGTIKLSPKIRSTPIAEAIPTIPLDKINSFLLANRIVDDEKTFTSAPYIVAGNAERIVSGTGDRIYA
RGKFADGQPAYGIFRQGKVYIDPKTKEVLGINADDIGGGEVVATEGDVATLALTRTTQEVRLGDRLFPTEERAVNSTFMP
GEPSREVKGEIIDVPRGVTQIGQFDVVTLNRGQRDGLAEGNVLAIYKVGETVRDRVTGESVKIPDERAGLLMVFRTYKKL
SYALVLMASRPLSVTDRVQNP

Nucleotide


Download         Length: 1026 bp        

>NTDB_id=625391 NYS59_RS00100 WP_126559387.1 21404..22429(+) (tsaP) [Pseudomonas aeruginosa strain 2718]
ATGAGGAAATCACTAGTCGCCCTTCTGCTCCTTGCCGCGAGCGGTCTGGCGCAGGCCCAGGTCGACCTCAGGGAAGGGCA
TCCGGACCGCTACACGGTGGTCAGGGGCGATACCCTGTGGGACATCTCGGGGAAATTCCTCCGCCAGCCATGGAAGTGGC
CGGAACTCTGGCACGTCAACCCGCAGATCCAGAATCCCCACCTGATCTACCCCGGCGACACCCTCAGCCTGGTCTACGTC
GATGGCCAGCCGCGCCTGGTGCTGAACCGTGGCGAATCGCGCGGGACCATCAAGCTGTCGCCGAAGATCCGCAGCACGCC
GATCGCCGAGGCCATCCCGACCATCCCGCTGGACAAGATCAACAGCTTCCTGCTGGCCAACCGCATCGTCGATGACGAGA
AGACCTTCACCAGCGCGCCGTACATCGTCGCCGGCAACGCCGAGCGGATCGTCAGCGGCACCGGCGACCGCATCTACGCC
CGCGGCAAGTTCGCCGACGGCCAGCCGGCCTATGGCATCTTCCGCCAGGGCAAGGTCTACATCGATCCGAAGACCAAGGA
AGTCCTCGGCATCAACGCCGACGACATCGGCGGCGGCGAGGTGGTGGCCACCGAAGGCGACGTCGCGACCCTGGCGCTGA
CCCGCACCACCCAGGAAGTGCGCCTGGGCGACCGCCTGTTCCCCACCGAGGAGCGTGCGGTGAATTCCACCTTCATGCCC
GGCGAGCCGAGCCGCGAGGTGAAGGGCGAAATCATCGACGTACCGCGCGGCGTGACCCAGATCGGCCAGTTCGACGTGGT
CACCCTGAACCGTGGCCAGCGCGACGGGCTGGCCGAGGGCAATGTGCTGGCGATCTACAAGGTCGGCGAGACGGTGCGCG
ACCGCGTTACCGGTGAGTCGGTGAAGATTCCCGACGAACGCGCCGGCCTGCTGATGGTGTTCCGTACCTACAAGAAGCTG
AGCTACGCCCTGGTTCTGATGGCCAGCAGGCCGCTCTCGGTAACCGACAGGGTGCAGAATCCCTGA

Domains

Predicted by InterProScan.

LysM domain (LysM)

(31-76)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tsaP Acinetobacter baumannii D1279779

36.512

100

0.393