Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbB   Type   Machinery gene
Locus tag   N288_RS21850 Genome accession   NC_022524
Coordinates   4437988..4438353 (-) Length   121 a.a.
NCBI ID   WP_009792678.1    Uniprot ID   U5L431
Organism   Bacillus infantis NRRL B-14911     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4432988..4443353
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N288_RS21835 (N288_23495) - 4433111..4433521 (+) 411 WP_009792681.1 helix-turn-helix domain-containing protein -
  N288_RS21840 (N288_23500) - 4433651..4437547 (-) 3897 WP_009792680.1 S8 family serine peptidase -
  N288_RS25285 - 4437758..4437907 (+) 150 WP_156917030.1 hypothetical protein -
  N288_RS21850 (N288_23510) ssbB 4437988..4438353 (-) 366 WP_009792678.1 single-stranded DNA-binding protein Machinery gene
  N288_RS21855 (N288_23515) - 4438619..4439050 (+) 432 WP_009792677.1 YwpF-like family protein -
  N288_RS21860 (N288_23520) - 4439082..4439471 (-) 390 WP_035402049.1 hypothetical protein -
  N288_RS21865 (N288_23525) - 4439582..4439917 (-) 336 WP_009792675.1 hypothetical protein -
  N288_RS21870 (N288_23530) fabZ 4440149..4440583 (-) 435 WP_009792674.1 3-hydroxyacyl-ACP dehydratase FabZ -
  N288_RS21875 (N288_23535) - 4440681..4440947 (-) 267 WP_009792673.1 DNA-directed RNA polymerase subunit beta -
  N288_RS21880 (N288_23540) - 4440963..4441787 (-) 825 WP_009792672.1 flagellar hook-basal body protein -
  N288_RS21885 (N288_23545) - 4441837..4442676 (-) 840 WP_009792671.1 flagellar hook-basal body protein -
  N288_RS25290 (N288_23550) - 4442947..4443117 (+) 171 WP_022544492.1 hypothetical protein -

Sequence

Protein


Download         Length: 121 a.a.        Molecular weight: 13573.43 Da        Isoelectric Point: 9.5168

>NTDB_id=62525 N288_RS21850 WP_009792678.1 4437988..4438353(-) (ssbB) [Bacillus infantis NRRL B-14911]
MINQAILVGRLTRNPELKITAEGVSVTNITLAVNRQYRNQQGEIEADFVQCTLWKKTAENTAQYCRKGSLIGITGRIQTR
NYDNQDGRKVYVTEVIAETVRFLEPKREIAAGSSGKELVSQ

Nucleotide


Download         Length: 366 bp        

>NTDB_id=62525 N288_RS21850 WP_009792678.1 4437988..4438353(-) (ssbB) [Bacillus infantis NRRL B-14911]
ATGATCAACCAGGCTATCTTAGTAGGAAGGCTAACAAGAAATCCAGAGCTGAAAATTACAGCAGAGGGTGTTTCGGTTAC
AAATATTACTCTGGCTGTGAACAGGCAGTACCGCAATCAGCAGGGTGAAATTGAAGCAGACTTTGTTCAGTGTACTCTAT
GGAAAAAAACAGCAGAAAACACAGCCCAATATTGCCGGAAAGGATCTCTGATCGGGATAACCGGCCGAATCCAGACAAGA
AATTACGATAACCAGGATGGCAGGAAGGTTTATGTGACCGAAGTGATTGCTGAAACAGTAAGATTCCTTGAGCCGAAACG
GGAAATTGCCGCCGGCAGCAGCGGGAAGGAGCTGGTAAGCCAGTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB U5L431

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbB Bacillus subtilis subsp. subtilis str. 168

64.286

92.562

0.595
  ssbA Bacillus subtilis subsp. subtilis str. 168

58.491

87.603

0.512
  ssbB/cilA Streptococcus mitis NCTC 12261

45.161

100

0.463
  ssbB/cilA Streptococcus pneumoniae TIGR4

45.161

100

0.463
  ssb Latilactobacillus sakei subsp. sakei 23K

51.887

87.603

0.455
  ssbB/cilA Streptococcus mitis SK321

44.355

100

0.455
  ssbB/cilA Streptococcus pneumoniae Rx1

44.355

100

0.455
  ssbB/cilA Streptococcus pneumoniae D39

44.355

100

0.455
  ssbB/cilA Streptococcus pneumoniae R6

44.355

100

0.455
  ssbB Streptococcus sobrinus strain NIDR 6715-7

48.113

87.603

0.421
  ssbA Streptococcus mutans UA159

46.226

87.603

0.405
  ssbB Lactococcus lactis subsp. cremoris KW2

42.105

94.215

0.397

Multiple sequence alignment