Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbB   Type   Machinery gene
Locus tag   LLY41_RS02290 Genome accession   NZ_CP086235
Coordinates   433320..433688 (+) Length   122 a.a.
NCBI ID   WP_095243274.1    Uniprot ID   -
Organism   Cytobacillus firmus strain T8     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 428320..438688
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LLY41_RS02260 (LLY41_02265) - 429329..430168 (+) 840 WP_095243268.1 flagellar hook-basal body protein -
  LLY41_RS02265 (LLY41_02270) - 430202..431029 (+) 828 WP_304586787.1 flagellar hook-basal body protein -
  LLY41_RS02270 (LLY41_02275) - 431048..431317 (+) 270 WP_304586788.1 DNA-directed RNA polymerase subunit beta -
  LLY41_RS02275 (LLY41_02280) fabZ 431728..432156 (+) 429 WP_061792847.1 3-hydroxyacyl-ACP dehydratase FabZ -
  LLY41_RS02280 (LLY41_02285) - 432290..432577 (+) 288 WP_095243272.1 hypothetical protein -
  LLY41_RS02285 (LLY41_02290) - 432596..433054 (-) 459 WP_304586789.1 YwpF-like family protein -
  LLY41_RS02290 (LLY41_02295) ssbB 433320..433688 (+) 369 WP_095243274.1 single-stranded DNA-binding protein Machinery gene
  LLY41_RS02295 (LLY41_02300) - 433694..433885 (+) 192 WP_304587998.1 hypothetical protein -
  LLY41_RS02300 (LLY41_02305) - 434043..434441 (-) 399 WP_179288960.1 helix-turn-helix domain-containing protein -
  LLY41_RS02305 (LLY41_02310) - 434646..435032 (+) 387 WP_095243277.1 hypothetical protein -
  LLY41_RS02310 (LLY41_02315) - 435040..437858 (-) 2819 Protein_425 DEAD/DEAH box helicase -

Sequence

Protein


Download         Length: 122 a.a.        Molecular weight: 14128.12 Da        Isoelectric Point: 9.4663

>NTDB_id=623884 LLY41_RS02290 WP_095243274.1 433320..433688(+) (ssbB) [Cytobacillus firmus strain T8]
MINQVTLVGRLTKDPELKRTQEGIPVTNVTLAVNRQYRNQNGEIDADFVQCTLWKKTAENTSQYCRKGTLIGVTGRIQTR
HYDNQEKKRIYVTEVVAESVRFLERKKTEDIPVTVTKEELPF

Nucleotide


Download         Length: 369 bp        

>NTDB_id=623884 LLY41_RS02290 WP_095243274.1 433320..433688(+) (ssbB) [Cytobacillus firmus strain T8]
ATGATCAATCAAGTGACCCTAGTGGGAAGGCTGACAAAGGATCCTGAGCTGAAAAGGACACAGGAGGGTATTCCGGTAAC
AAATGTGACACTGGCCGTTAACCGCCAGTACCGGAACCAGAATGGTGAAATCGATGCAGACTTTGTGCAGTGCACCTTAT
GGAAGAAAACGGCTGAAAATACATCCCAGTATTGCCGGAAAGGAACCCTGATTGGAGTAACCGGGCGGATCCAGACAAGG
CATTATGATAATCAGGAAAAGAAGCGCATTTACGTAACAGAGGTGGTAGCGGAATCCGTCCGCTTTCTTGAACGGAAGAA
GACAGAGGACATTCCGGTGACTGTAACCAAGGAGGAGCTTCCGTTTTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbB Bacillus subtilis subsp. subtilis str. 168

62.385

89.344

0.557
  ssbA Bacillus subtilis subsp. subtilis str. 168

57.009

87.705

0.5
  ssb Latilactobacillus sakei subsp. sakei 23K

50.926

88.525

0.451
  ssbB/cilA Streptococcus pneumoniae TIGR4

40.152

100

0.434
  ssbB Streptococcus sobrinus strain NIDR 6715-7

40.152

100

0.434
  ssbB/cilA Streptococcus mitis NCTC 12261

40.152

100

0.434
  ssbB/cilA Streptococcus pneumoniae Rx1

39.394

100

0.426
  ssbB/cilA Streptococcus pneumoniae D39

39.394

100

0.426
  ssbB/cilA Streptococcus pneumoniae R6

39.394

100

0.426
  ssbB/cilA Streptococcus mitis SK321

39.394

100

0.426
  ssbA Streptococcus mutans UA159

38.636

100

0.418
  ssbB Lactococcus lactis subsp. cremoris KW2

42.056

87.705

0.369