Detailed information NTG0622403

Bioinformatically predicted

Overview

• Name: comGC
• Type: Machinery gene
• Locus tag: LL045_RS11410
• Genome accession: NZ_CP086083
• Coordinates: 2317278..2317661 (-)
• Length: 127 a.a.
• NCBI ID: WP_080651958.1
• Uniprot ID: -
• Organism: Lactococcus lactis subsp. lactis strain EIP20A
• Function: dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2312278..2322661

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LL045_RS11370 (LL045_11340)	-	2312813..2313622 (-)	810	WP_038602349.1	metal ABC transporter permease	-
LL045_RS11375 (LL045_11345)	-	2313615..2314352 (-)	738	WP_021723055.1	metal ABC transporter ATP-binding protein	-
LL045_RS11380 (LL045_11350)	-	2314530..2315372 (-)	843	WP_038602352.1	metal ABC transporter substrate-binding protein	-
LL045_RS11385 (LL045_11355)	-	2315369..2315806 (-)	438	WP_021721874.1	zinc-dependent MarR family transcriptional regulator	-
LL045_RS11390 (LL045_11360)	comGG	2315887..2316162 (-)	276	WP_021721873.1	hypothetical protein	Machinery gene
LL045_RS11395 (LL045_11365)	comGF	2316210..2316656 (-)	447	WP_021721872.1	competence type IV pilus minor pilin ComGF	Machinery gene
LL045_RS11400 (LL045_11370)	comGE	2316619..2316915 (-)	297	WP_038602356.1	competence type IV pilus minor pilin ComGE	Machinery gene
LL045_RS11405 (LL045_11375)	comGD	2316887..2317318 (-)	432	WP_080651959.1	competence type IV pilus minor pilin ComGD	Machinery gene
LL045_RS11410 (LL045_11380)	comGC	2317278..2317661 (-)	384	WP_080651958.1	competence type IV pilus major pilin ComGC	Machinery gene
LL045_RS11415 (LL045_11385)	comGB	2317675..2318748 (-)	1074	WP_394530628.1	competence type IV pilus assembly protein ComGB	Machinery gene
LL045_RS11420 (LL045_11390)	comGA	2318642..2319580 (-)	939	WP_394530221.1	competence type IV pilus ATPase ComGA	Machinery gene

Sequence

Protein

• Length: 127 a.a.
• Molecular weight: 14811.42 Da
• Isoelectric Point: 8.4538

>NTDB_id=622403 LL045_RS11410 WP_080651958.1 2317278..2317661(-) (comGC) [Lactococcus lactis subsp. lactis strain EIP20A]
MERTKKFILKKIQKIFLFVKICEKKCRQKELKAFTLIEMLIVLAIISILILLFVPNLIKEKSQVQKTGEAAVVKVVESQA
QLYELDHDDEKPTLSELLSAGMITQKQISAYDNYYDQNKNEERNFND

Nucleotide

• Length: 384 bp

>NTDB_id=622403 LL045_RS11410 WP_080651958.1 2317278..2317661(-) (comGC) [Lactococcus lactis subsp. lactis strain EIP20A]
ATGGAAAGAACAAAGAAGTTTATTTTAAAGAAAATACAAAAAATATTTTTATTCGTTAAAATTTGTGAAAAAAAATGCCG
TCAGAAAGAGCTAAAAGCTTTTACTTTGATAGAGATGTTAATTGTACTAGCTATTATTAGTATTTTGATATTACTATTTG
TTCCAAATTTAATTAAAGAAAAATCACAAGTTCAAAAAACTGGAGAAGCGGCAGTTGTAAAAGTAGTAGAAAGTCAAGCT
CAACTTTATGAATTAGATCATGATGATGAGAAGCCGACTCTGTCAGAATTGCTCAGCGCTGGGATGATTACTCAAAAACA
AATTTCTGCTTACGATAATTACTATGATCAGAATAAAAATGAAGAACGAAATTTTAATGACTAG

Domains

Predicted by InterproScan.

• Prokaryotic N-terminal methylation motif (N_methyl) (32-52)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comGC	Lactococcus lactis subsp. cremoris KW2	81.034	91.339	0.74
comYC	Streptococcus mutans UA159	56.436	79.528	0.449
comYC	Streptococcus mutans UA140	56.436	79.528	0.449
comYC	Streptococcus gordonii str. Challis substr. CH1	57.576	77.953	0.449
comGC/cglC	Streptococcus mitis SK321	55.446	79.528	0.441
comGC/cglC	Streptococcus pneumoniae TIGR4	53.465	79.528	0.425
comGC/cglC	Streptococcus pneumoniae Rx1	53.465	79.528	0.425
comGC/cglC	Streptococcus pneumoniae D39	53.465	79.528	0.425
comGC/cglC	Streptococcus pneumoniae R6	53.465	79.528	0.425
comYC	Streptococcus suis isolate S10	57.955	69.291	0.402
comGC/cglC	Streptococcus mitis NCTC 12261	57.303	70.079	0.402