Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   LLJ08_RS15900 Genome accession   NZ_CP086067
Coordinates   3408309..3409526 (-) Length   405 a.a.
NCBI ID   WP_179484724.1    Uniprot ID   -
Organism   Stutzerimonas chloritidismutans strain 6L11     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3403309..3414526
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LLJ08_RS15865 (LLJ08_15870) rpsI 3403443..3403835 (-) 393 WP_003302797.1 30S ribosomal protein S9 -
  LLJ08_RS15870 (LLJ08_15875) rplM 3403850..3404278 (-) 429 WP_003302798.1 50S ribosomal protein L13 -
  LLJ08_RS15875 (LLJ08_15880) - 3404711..3405748 (+) 1038 WP_179484720.1 NADP(H)-dependent aldo-keto reductase -
  LLJ08_RS15880 (LLJ08_15885) - 3405812..3406492 (+) 681 WP_042928463.1 energy-coupling factor ABC transporter permease -
  LLJ08_RS15885 (LLJ08_15890) yacG 3406503..3406700 (-) 198 WP_179484721.1 DNA gyrase inhibitor YacG -
  LLJ08_RS15890 (LLJ08_15895) coaE 3406697..3407305 (-) 609 WP_179484722.1 dephospho-CoA kinase -
  LLJ08_RS15895 (LLJ08_15900) pilD 3407437..3408306 (-) 870 WP_179484723.1 prepilin peptidase Machinery gene
  LLJ08_RS15900 (LLJ08_15905) pilC 3408309..3409526 (-) 1218 WP_179484724.1 type II secretion system F family protein Machinery gene
  LLJ08_RS15905 (LLJ08_15910) pilB 3409528..3411231 (-) 1704 WP_179484725.1 type IV-A pilus assembly ATPase PilB Machinery gene
  LLJ08_RS15915 (LLJ08_15920) pilA/pilA1 3411551..3411982 (+) 432 WP_179484726.1 pilin Machinery gene
  LLJ08_RS15920 (LLJ08_15925) cysN 3412348..3414246 (-) 1899 WP_228207446.1 sulfate adenylyltransferase subunit CysN -

Sequence

Protein


Download         Length: 405 a.a.        Molecular weight: 43861.55 Da        Isoelectric Point: 9.9279

>NTDB_id=622284 LLJ08_RS15900 WP_179484724.1 3408309..3409526(-) (pilC) [Stutzerimonas chloritidismutans strain 6L11]
MAQKAIKTSVFTWEGTNKQGAKIKGELSGVSPALVKAQLRKQGVNPQKVRKKSVSLFGAGKKIKPMDIALFTRQMATMMK
AGVPLLQSFDIIGEGFDNPNMRKLVDDLKQDVAAGNSFATALRKKPQYFDDLYCNLVDSGEQSGSLETLLDRVATYKEKT
EALKAKIKKAMNYPIAVVLVAIVVSAILLIKVVPQFQDVFSNFGAELPAFTLFVIGISEALQAWWHLVLLALVGAAYAFK
TAHGKSERFRNSFDRFLLKMPIVGDILYKSAVARFARTLATTFAAGVPLVDALDSVAGATGNVVFRNATMKVKGDVSSGM
QLNFSMRTTGTFPSMAIQMTAIGEESGSLDEMLAKVATFYEDEVDNMVDGLTALMEPMIMAVLGVLVGGLIIAMYLPIFQ
LGAVV

Nucleotide


Download         Length: 1218 bp        

>NTDB_id=622284 LLJ08_RS15900 WP_179484724.1 3408309..3409526(-) (pilC) [Stutzerimonas chloritidismutans strain 6L11]
ATGGCGCAGAAAGCGATTAAAACCAGTGTCTTCACCTGGGAAGGTACCAACAAGCAAGGCGCGAAGATAAAGGGCGAGCT
CAGTGGCGTCAGTCCCGCGCTGGTGAAAGCGCAGCTGCGCAAACAGGGTGTCAACCCGCAGAAGGTGCGTAAGAAGTCGG
TCTCATTGTTCGGTGCTGGCAAGAAGATCAAGCCGATGGACATCGCCTTGTTCACTCGCCAGATGGCAACCATGATGAAG
GCGGGTGTGCCGCTTCTGCAGTCGTTCGACATTATCGGGGAAGGCTTTGACAATCCGAATATGCGAAAGCTGGTGGATGA
TCTAAAACAGGACGTCGCGGCAGGGAATAGTTTCGCAACCGCCCTTCGTAAGAAGCCTCAATACTTCGATGATCTGTATT
GCAACTTAGTGGATTCCGGTGAGCAATCCGGTTCGCTGGAAACGCTGCTTGATCGGGTGGCGACGTACAAGGAAAAGACT
GAAGCTCTGAAAGCCAAGATCAAGAAGGCGATGAATTACCCCATTGCCGTGGTGCTGGTTGCAATCGTCGTTTCGGCGAT
CCTGCTGATCAAGGTGGTTCCACAGTTTCAGGATGTATTCTCGAACTTCGGTGCAGAGCTTCCGGCATTCACATTGTTTG
TGATTGGCATATCCGAAGCGCTTCAGGCTTGGTGGCATCTGGTTTTGCTGGCGTTGGTCGGTGCTGCCTATGCCTTCAAG
ACTGCTCACGGCAAGTCCGAGCGCTTTCGTAACTCGTTTGACAGGTTTCTTCTTAAGATGCCGATTGTCGGAGATATTCT
CTATAAATCTGCTGTTGCGCGTTTCGCGCGCACCTTAGCTACGACCTTTGCCGCAGGCGTGCCATTGGTAGATGCGTTGG
ATTCGGTCGCTGGAGCAACGGGCAATGTGGTGTTCCGCAATGCAACAATGAAAGTGAAGGGCGACGTTTCGAGTGGTATG
CAGCTCAACTTTTCTATGCGCACGACCGGCACCTTTCCGAGCATGGCTATCCAGATGACTGCGATCGGCGAAGAGTCCGG
CTCTCTCGATGAAATGTTGGCTAAAGTGGCGACCTTCTATGAAGACGAAGTCGACAATATGGTCGACGGGCTGACTGCTC
TGATGGAGCCAATGATCATGGCGGTGCTTGGTGTGCTGGTCGGCGGTTTGATCATTGCCATGTATCTCCCGATTTTCCAG
CTGGGTGCCGTCGTCTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(275-397)

Type II secretion system (T2SS), protein F (T2SSF)

(71-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

89.877

100

0.899
  pilC Acinetobacter baylyi ADP1

59.36

100

0.595
  pilC Acinetobacter baumannii D1279779

58.519

100

0.585
  pilC Legionella pneumophila strain ERS1305867

53.788

97.778

0.526
  pilG Neisseria gonorrhoeae MS11

45.274

99.259

0.449
  pilG Neisseria meningitidis 44/76-A

45.274

99.259

0.449
  pilC Vibrio cholerae strain A1552

42.929

97.778

0.42
  pilC Vibrio campbellii strain DS40M4

41.162

97.778

0.402
  pilC Thermus thermophilus HB27

37.093

98.519

0.365