Detailed information NTG0622283

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: LLJ08_RS15895
• Genome accession: NZ_CP086067
• Coordinates: 3407437..3408306 (-)
• Length: 289 a.a.
• NCBI ID: WP_179484723.1
• Uniprot ID: -
• Organism: Stutzerimonas chloritidismutans strain 6L11
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3402437..3413306

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LLJ08_RS15860 (LLJ08_15865)	petA	3402593..3403186 (-)	594	WP_003302796.1	ubiquinol-cytochrome c reductase iron-sulfur subunit	-
LLJ08_RS15865 (LLJ08_15870)	rpsI	3403443..3403835 (-)	393	WP_003302797.1	30S ribosomal protein S9	-
LLJ08_RS15870 (LLJ08_15875)	rplM	3403850..3404278 (-)	429	WP_003302798.1	50S ribosomal protein L13	-
LLJ08_RS15875 (LLJ08_15880)	-	3404711..3405748 (+)	1038	WP_179484720.1	NADP(H)-dependent aldo-keto reductase	-
LLJ08_RS15880 (LLJ08_15885)	-	3405812..3406492 (+)	681	WP_042928463.1	energy-coupling factor ABC transporter permease	-
LLJ08_RS15885 (LLJ08_15890)	yacG	3406503..3406700 (-)	198	WP_179484721.1	DNA gyrase inhibitor YacG	-
LLJ08_RS15890 (LLJ08_15895)	coaE	3406697..3407305 (-)	609	WP_179484722.1	dephospho-CoA kinase	-
LLJ08_RS15895 (LLJ08_15900)	pilD	3407437..3408306 (-)	870	WP_179484723.1	prepilin peptidase	Machinery gene
LLJ08_RS15900 (LLJ08_15905)	pilC	3408309..3409526 (-)	1218	WP_179484724.1	type II secretion system F family protein	Machinery gene
LLJ08_RS15905 (LLJ08_15910)	pilB	3409528..3411231 (-)	1704	WP_179484725.1	type IV-A pilus assembly ATPase PilB	Machinery gene
LLJ08_RS15915 (LLJ08_15920)	pilA/pilA1	3411551..3411982 (+)	432	WP_179484726.1	pilin	Machinery gene

Sequence

Protein

• Length: 289 a.a.
• Molecular weight: 32243.23 Da
• Isoelectric Point: 6.4779

>NTDB_id=622283 LLJ08_RS15895 WP_179484723.1 3407437..3408306(-) (pilD) [Stutzerimonas chloritidismutans strain 6L11]
MMLIDYLASHVLAFVLSAALLGLLIGSFLNVVIYRLPIMMQREWRAQALEYLECPPEPIRERFNLLLPSSRCPHCDHQIR
SWENIPLVSWLALRGKCSSCQAPISGRYPLVELACGLLSGYVAWHFGFTWEAGAMLLLTWGLVAMSMIDIDHQLLPDSLV
LPLLWLGLILNSFGLFVSLESALWGAVAGYLSLWSVYWLFKLATGKEGMGYGDFKLLAMLGAWGGWQVLPLTILLSSVVG
AVLGTILLRVQRAESSTPIPFGPYLAIAGWIALLWGDWITESYLHFARF

Nucleotide

• Length: 870 bp

>NTDB_id=622283 LLJ08_RS15895 WP_179484723.1 3407437..3408306(-) (pilD) [Stutzerimonas chloritidismutans strain 6L11]
ATGATGTTGATCGATTATCTGGCCAGCCACGTGCTGGCCTTTGTTTTGTCCGCTGCATTGCTGGGCTTGTTGATCGGCAG
CTTCCTCAACGTCGTGATTTATCGCCTGCCGATCATGATGCAGCGTGAGTGGCGCGCGCAGGCGCTTGAGTATCTCGAGT
GCCCGCCGGAGCCGATCCGTGAGCGCTTCAATCTGCTGCTGCCAAGTTCGCGGTGCCCGCACTGTGATCATCAGATTCGC
TCTTGGGAGAATATCCCCTTAGTCAGCTGGCTGGCCTTGCGTGGCAAGTGTTCGTCATGCCAGGCACCGATCAGTGGTCG
CTATCCCCTCGTGGAGTTGGCGTGCGGCCTGCTTTCTGGCTATGTCGCTTGGCATTTCGGTTTCACCTGGGAGGCAGGAG
CAATGCTGTTGCTGACCTGGGGATTGGTGGCGATGAGCATGATCGATATCGATCACCAGTTGCTGCCCGATTCGCTGGTT
CTGCCGTTGTTGTGGCTTGGTCTCATCCTGAACAGCTTCGGTTTGTTCGTATCGCTTGAAAGTGCACTGTGGGGAGCGGT
AGCGGGATATCTGAGCCTGTGGTCGGTTTATTGGCTGTTCAAGCTGGCCACCGGCAAAGAAGGTATGGGCTATGGCGATT
TCAAACTGCTTGCGATGTTAGGAGCTTGGGGTGGCTGGCAGGTGTTACCCCTTACCATCCTATTGTCATCGGTGGTTGGG
GCTGTTCTTGGCACAATCCTGTTGCGGGTGCAGCGCGCCGAGAGCAGCACGCCCATCCCTTTCGGTCCCTACTTGGCGAT
CGCCGGCTGGATCGCGTTGCTTTGGGGTGACTGGATCACCGAGAGCTATCTCCATTTCGCGCGCTTCTAA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (137-244)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (20-126)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	59.058	95.502	0.564
pilD	Vibrio campbellii strain DS40M4	56.41	94.464	0.533
pilD	Acinetobacter baumannii D1279779	52.817	98.27	0.519
pilD	Acinetobacter nosocomialis M2	52.817	98.27	0.519
pilD	Neisseria gonorrhoeae MS11	53.64	90.311	0.484