NTDB

Overview

Name	ssbB/cilA	Type	Machinery gene
Locus tag	LK450_RS08420	Genome accession	NZ_CP085939
Coordinates	1703052..1703447 (+)	Length	131 a.a.
NCBI ID	WP_003028522.1	Uniprot ID	A0AAI9NIC2
Organism	Streptococcus anginosus subsp. anginosus strain FDAARGOS_1569
Function	ssDNA binding (predicted from homology) DNA processing

Genomic Context

Location: 1698052..1708447

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LK450_RS08390 (LK450_08390)	-	1698438..1699742 (+)	1305	WP_003030856.1	folylpolyglutamate synthase/dihydrofolate synthase family protein	-
LK450_RS08395 (LK450_08395)	-	1699920..1700480 (+)	561	WP_018543594.1	folate family ECF transporter S component	-
LK450_RS08400 (LK450_08400)	pepA	1700543..1701607 (-)	1065	WP_003030888.1	glutamyl aminopeptidase	-
LK450_RS08405 (LK450_08405)	-	1701727..1702014 (+)	288	WP_003030900.1	DUF4651 domain-containing protein	-
LK450_RS08410 (LK450_08410)	-	1702011..1702328 (+)	318	WP_003030917.1	thioredoxin family protein	-
LK450_RS08415 (LK450_08415)	ytpR	1702345..1702971 (+)	627	WP_003030886.1	YtpR family tRNA-binding protein	-
LK450_RS08420 (LK450_08420)	ssbB/cilA	1703052..1703447 (+)	396	WP_003028522.1	single-stranded DNA-binding protein	Machinery gene
LK450_RS08425 (LK450_08425)	-	1703740..1704726 (+)	987	WP_003030919.1	sugar ABC transporter substrate-binding protein	-
LK450_RS08430 (LK450_08430)	-	1704726..1706039 (+)	1314	WP_003030861.1	sensor histidine kinase	-
LK450_RS08435 (LK450_08435)	-	1706032..1706715 (+)	684	WP_003030916.1	response regulator transcription factor	-
LK450_RS08440 (LK450_08440)	-	1706712..1707998 (+)	1287	WP_026248189.1	ABC transporter substrate-binding protein	-

Sequence

Protein

Download Length: 131 a.a. Molecular weight: 14671.59 Da Isoelectric Point: 5.9381

                                >NTDB_id=621437 LK450_RS08420 WP_003028522.1 1703052..1703447(+) (ssbB/cilA) [Streptococcus anginosus subsp. anginosus strain FDAARGOS_1569]

MYNKVILIGRLVNTPELNKTANDKSVARATLAVNRRYKGQNGEREADFVNVVVWGKLAETLASYASKGSLISLDGELRTR

RYEKDGVTHYVTEVLCNGFQLLESRAQRALRENNAGADLADLLLEEEELPF

Nucleotide

Download Length: 396 bp

                                >NTDB_id=621437 LK450_RS08420 WP_003028522.1 1703052..1703447(+) (ssbB/cilA) [Streptococcus anginosus subsp. anginosus strain FDAARGOS_1569]

ATGTATAATAAAGTAATTTTAATCGGTCGCTTGGTGAATACACCAGAGTTAAACAAAACAGCTAATGATAAATCTGTGGC

GCGTGCAACACTTGCGGTCAATCGTCGCTACAAAGGACAAAATGGTGAACGAGAAGCAGACTTCGTCAATGTCGTTGTTT

GGGGCAAGTTAGCCGAAACATTGGCAAGTTATGCAAGTAAAGGCAGCTTGATTTCACTAGACGGCGAACTTCGCACTCGC

CGTTATGAGAAAGACGGAGTGACGCATTATGTCACAGAAGTGCTTTGCAATGGTTTCCAGCTATTAGAAAGCCGTGCACA

GCGAGCTCTTCGTGAGAATAATGCAGGTGCAGACTTGGCAGATTTGCTTCTGGAAGAAGAGGAATTGCCATTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(3-101)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
ssbB/cilA	Streptococcus pneumoniae TIGR4	83.969	100	0.84
ssbB/cilA	Streptococcus mitis NCTC 12261	83.206	100	0.832
ssbB/cilA	Streptococcus pneumoniae Rx1	83.206	100	0.832
ssbB/cilA	Streptococcus pneumoniae D39	83.206	100	0.832
ssbB/cilA	Streptococcus pneumoniae R6	83.206	100	0.832
ssbB/cilA	Streptococcus mitis SK321	83.206	100	0.832
ssbA	Streptococcus mutans UA159	80.153	100	0.802
ssbB	Streptococcus sobrinus strain NIDR 6715-7	75.573	100	0.756
ssbB	Lactococcus lactis subsp. cremoris KW2	61.607	85.496	0.527
ssbA	Bacillus subtilis subsp. subtilis str. 168	50	80.916	0.405
ssb	Latilactobacillus sakei subsp. sakei 23K	46.018	86.26	0.397
ssbB	Bacillus subtilis subsp. subtilis str. 168	45.37	82.443	0.374

Detailed information NTG0621437