Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   LJY22_RS12990 Genome accession   NZ_CP085843
Coordinates   2826034..2827776 (-) Length   580 a.a.
NCBI ID   WP_243328462.1    Uniprot ID   -
Organism   Vibrio diabolicus strain NV27     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2821034..2832776
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LJY22_RS12970 (LJY22_12960) - 2821719..2822558 (-) 840 WP_047009939.1 Dam family site-specific DNA-(adenine-N6)-methyltransferase -
  LJY22_RS12975 (LJY22_12965) - 2822628..2824142 (-) 1515 WP_124008948.1 SPOR domain-containing protein -
  LJY22_RS12980 (LJY22_12970) aroB 2824195..2825295 (-) 1101 WP_257896997.1 3-dehydroquinate synthase -
  LJY22_RS12985 (LJY22_12975) aroK 2825328..2825846 (-) 519 WP_005381319.1 shikimate kinase AroK -
  LJY22_RS12990 (LJY22_12980) pilQ 2826034..2827776 (-) 1743 WP_243328462.1 type IV pilus secretin PilQ Machinery gene
  LJY22_RS12995 (LJY22_12985) pilP 2827808..2828323 (-) 516 WP_005395715.1 pilus assembly protein PilP Machinery gene
  LJY22_RS13000 (LJY22_12990) pilO 2828313..2828906 (-) 594 WP_257896998.1 type 4a pilus biogenesis protein PilO Machinery gene
  LJY22_RS13005 (LJY22_12995) pilN 2828899..2829474 (-) 576 WP_046874634.1 PilN domain-containing protein Machinery gene
  LJY22_RS13010 (LJY22_13000) pilM 2829458..2830474 (-) 1017 WP_005395718.1 type IV pilus biogenesis protein PilM Machinery gene

Sequence

Protein


Download         Length: 580 a.a.        Molecular weight: 63532.38 Da        Isoelectric Point: 4.4266

>NTDB_id=620821 LJY22_RS12990 WP_243328462.1 2826034..2827776(-) (pilQ) [Vibrio diabolicus strain NV27]
MRQGLTRTTRILTGLFSLWLFVFLAPLVAAEEVSSNALKNIDFRTNKDKDAVIVVELASPAAIVDVKRVQEGLSIDLLNT
SVKDEQLYLLDVKDFSTVVESVEVFRDTSTTRLVAHINEEYTHDYRLTGRFLEIKVAKIKPNEKAPDKSILEKEGKLISI
NFQDIPVRNVLQLIADYNQFNLVVSDSVEGNLTLRLDGVPWQQVLDIILQVKGLDKRVDGNVILVAPTDELDLREKQQLE
KQQLEQTMGELSSEIIKVNFAKASDIAEMINGEGNISMLSERGSMTIDERTNSLLIRELPENIEVIREIIESLDIPVKQV
QIEARIVTINEGNMDELGIRWGFTSINGNNTVGGSIENNLATIGLYNGGGEGEDGGDGDGVGIDDFLNVNLAATSPNATS
IAFQVAKLGSDTLLDLELSALQQESKAEIISSPRLITTNKKPAYIEQGTEIPYLESSSSGATTVTFKKAVLSLKVTPQIT
PDNRLVLDLSVTQDRPGQVVKTGTGEAVAIDTQRIGTQVLVNNGETVVLGGIFQHSITNSVDKVPLLGDLPLLGALFRRS
YENVGKSELLIFVTPKVVIQ

Nucleotide


Download         Length: 1743 bp        

>NTDB_id=620821 LJY22_RS12990 WP_243328462.1 2826034..2827776(-) (pilQ) [Vibrio diabolicus strain NV27]
ATGAGACAAGGATTAACACGTACAACAAGGATACTAACTGGGCTCTTCTCCTTATGGTTGTTTGTATTTTTAGCCCCTTT
AGTGGCAGCAGAAGAAGTATCGTCTAATGCCTTAAAGAATATCGACTTTCGCACTAATAAAGATAAAGACGCCGTTATAG
TCGTTGAACTGGCGTCACCTGCCGCGATTGTTGATGTCAAACGCGTACAGGAAGGGTTAAGTATCGATTTGCTTAATACT
TCGGTAAAAGACGAGCAACTGTATCTCCTAGACGTAAAAGATTTCTCGACTGTGGTTGAAAGCGTAGAGGTGTTTCGCGA
TACCTCAACTACGCGCTTGGTTGCGCACATTAATGAAGAATATACGCATGATTACCGTTTAACAGGGCGATTCTTGGAAA
TCAAAGTGGCTAAGATCAAACCCAATGAGAAAGCCCCGGATAAAAGCATTCTAGAAAAAGAAGGCAAGCTCATTTCAATT
AACTTCCAAGATATTCCTGTACGTAACGTGTTACAGCTGATTGCCGACTACAACCAGTTCAACTTGGTTGTTTCAGACTC
CGTAGAAGGTAACCTCACACTTCGTCTTGATGGTGTTCCGTGGCAGCAAGTGCTGGATATTATTTTGCAAGTTAAGGGGT
TAGATAAGCGTGTTGATGGAAATGTGATTCTGGTTGCTCCAACAGATGAGCTTGATCTGCGCGAAAAACAGCAACTCGAA
AAGCAGCAGCTAGAACAAACGATGGGAGAGCTTTCGTCTGAAATCATCAAGGTAAACTTCGCCAAAGCTTCAGACATTGC
AGAGATGATCAACGGAGAAGGGAACATCAGTATGTTGTCTGAGCGAGGCAGTATGACCATTGATGAGCGGACTAACTCGT
TATTGATTCGTGAGCTACCTGAAAACATTGAAGTGATTCGAGAAATTATTGAATCTTTGGATATCCCGGTGAAGCAGGTT
CAAATTGAAGCGCGTATTGTGACCATCAATGAAGGCAACATGGACGAGTTGGGAATTCGCTGGGGCTTTACCTCTATTAA
TGGCAATAACACGGTTGGTGGCTCTATCGAAAACAACCTTGCCACGATCGGTTTATATAACGGTGGTGGTGAAGGAGAAG
ACGGTGGTGACGGTGATGGAGTAGGTATCGATGACTTCCTAAACGTAAACTTAGCTGCAACCAGTCCAAACGCGACCAGC
ATTGCTTTTCAGGTCGCAAAACTAGGCTCAGACACATTGTTAGACCTCGAGCTTTCTGCGCTGCAACAAGAGTCCAAAGC
TGAGATTATCTCAAGCCCACGTTTGATCACTACCAATAAGAAGCCTGCCTATATTGAGCAGGGTACCGAGATACCTTATC
TAGAGTCCTCATCAAGTGGTGCTACGACGGTAACGTTCAAAAAAGCAGTATTGAGTTTGAAGGTGACGCCACAAATTACA
CCGGATAACCGTCTTGTGTTGGACTTAAGCGTTACGCAAGATAGACCTGGACAAGTCGTGAAAACAGGTACTGGTGAAGC
CGTTGCGATTGATACTCAACGTATCGGGACGCAAGTGTTAGTAAATAACGGTGAAACCGTCGTTCTTGGTGGTATTTTCC
AGCACAGCATTACTAACTCGGTGGACAAGGTGCCTTTGTTAGGCGATCTGCCACTATTAGGTGCGCTTTTCCGTCGAAGT
TATGAAAATGTTGGCAAAAGTGAGCTGTTAATTTTCGTCACCCCTAAGGTGGTGATTCAGTAG

Domains

Predicted by InterproScan.

Bacterial type II/III secretion system short domain (Secretin_N)

(254-319)

Bacterial type II and III secretion system protein (Secretin)

(420-578)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Vibrio campbellii strain DS40M4

92.586

100

0.926
  pilQ Vibrio cholerae O1 biovar El Tor strain E7946

74.786

100

0.752
  pilQ Vibrio cholerae strain A1552

74.786

100

0.752
  pilQ Legionella pneumophila strain Lp02

40.787

96.379

0.393
  pilQ Legionella pneumophila strain ERS1305867

40.787

96.379

0.393
  pilQ Pseudomonas aeruginosa PAK

39.894

97.241

0.388
  comQ Acinetobacter baylyi ADP1

37.522

100

0.376
  pilQ Acinetobacter baumannii strain A118

36.577

100

0.376
  pilQ Acinetobacter baumannii D1279779

36.577

100

0.376