Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   LJY22_RS13005 Genome accession   NZ_CP085843
Coordinates   2828899..2829474 (-) Length   191 a.a.
NCBI ID   WP_046874634.1    Uniprot ID   -
Organism   Vibrio diabolicus strain NV27     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2823899..2834474
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LJY22_RS12980 (LJY22_12970) aroB 2824195..2825295 (-) 1101 WP_257896997.1 3-dehydroquinate synthase -
  LJY22_RS12985 (LJY22_12975) aroK 2825328..2825846 (-) 519 WP_005381319.1 shikimate kinase AroK -
  LJY22_RS12990 (LJY22_12980) pilQ 2826034..2827776 (-) 1743 WP_243328462.1 type IV pilus secretin PilQ Machinery gene
  LJY22_RS12995 (LJY22_12985) pilP 2827808..2828323 (-) 516 WP_005395715.1 pilus assembly protein PilP Machinery gene
  LJY22_RS13000 (LJY22_12990) pilO 2828313..2828906 (-) 594 WP_257896998.1 type 4a pilus biogenesis protein PilO Machinery gene
  LJY22_RS13005 (LJY22_12995) pilN 2828899..2829474 (-) 576 WP_046874634.1 PilN domain-containing protein Machinery gene
  LJY22_RS13010 (LJY22_13000) pilM 2829458..2830474 (-) 1017 WP_005395718.1 type IV pilus biogenesis protein PilM Machinery gene
  LJY22_RS13015 (LJY22_13005) - 2830618..2833179 (+) 2562 WP_257896999.1 penicillin-binding protein 1A -
  LJY22_RS13020 (LJY22_13010) oxyR 2833231..2834142 (-) 912 WP_164667088.1 DNA-binding transcriptional regulator OxyR -

Sequence

Protein


Download         Length: 191 a.a.        Molecular weight: 22353.85 Da        Isoelectric Point: 7.0774

>NTDB_id=620824 LJY22_RS13005 WP_046874634.1 2828899..2829474(-) (pilN) [Vibrio diabolicus strain NV27]
MLYRINLLPWRENQREEHRRRFISLVALGMLVAIGIQWGIGKFFEYQQDQQQERLDYLTHYIAELDQRIEAMKIAEQEHS
KILERLKVVEGLQNGRNKTTEFMNLMPAVIPEGVYVDKIKMNDLEIEISGISDSTPKLATMLDNMERSAKLNDVEMHSIV
HGKARFGKEFQTFKVSFMFKVPEKKVEAQHG

Nucleotide


Download         Length: 576 bp        

>NTDB_id=620824 LJY22_RS13005 WP_046874634.1 2828899..2829474(-) (pilN) [Vibrio diabolicus strain NV27]
GTGCTTTATCGCATTAATTTACTTCCTTGGCGAGAGAACCAAAGAGAAGAGCACCGACGTCGTTTCATTAGCTTGGTCGC
GTTAGGCATGTTGGTCGCCATTGGTATTCAATGGGGTATTGGAAAGTTTTTTGAGTACCAACAAGATCAGCAGCAGGAGC
GGCTTGATTACCTTACTCACTACATTGCTGAGCTCGACCAGCGTATTGAAGCAATGAAAATCGCCGAGCAAGAGCACAGC
AAAATCCTCGAACGTTTAAAAGTGGTTGAAGGGTTACAAAACGGTAGAAACAAAACGACCGAGTTTATGAACTTGATGCC
AGCCGTCATTCCTGAAGGTGTATATGTCGACAAGATCAAAATGAATGATCTGGAAATTGAGATCTCGGGGATCTCTGATA
GCACTCCAAAACTTGCCACGATGCTGGACAACATGGAGCGTTCGGCCAAGTTGAATGATGTAGAAATGCACTCCATCGTT
CACGGAAAAGCGCGTTTTGGAAAAGAGTTCCAAACGTTCAAAGTGTCTTTCATGTTCAAAGTGCCGGAGAAGAAAGTGGA
GGCCCAGCATGGTTGA

Domains

Predicted by InterproScan.

Fimbrial assembly protein (PilN) (PilN)

(103-176)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Vibrio campbellii strain DS40M4

83.246

100

0.832
  pilN Vibrio cholerae strain A1552

60.106

98.429

0.592