Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   NW957_RS03640 Genome accession   NZ_CP102977
Coordinates   763030..764112 (+) Length   360 a.a.
NCBI ID   WP_165469083.1    Uniprot ID   -
Organism   Staphylococcus aureus strain 27-G-H     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 758030..769112
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NW957_RS03620 (NW957_03620) - 758407..759477 (-) 1071 WP_000460983.1 GGDEF domain-containing protein -
  NW957_RS03625 (NW957_03625) - 759795..760850 (+) 1056 WP_000258150.1 MraY family glycosyltransferase -
  NW957_RS03630 (NW957_03630) - 761015..761656 (-) 642 WP_000192949.1 YigZ family protein -
  NW957_RS03635 (NW957_03635) fakB1 761800..762666 (+) 867 WP_000686344.1 fatty acid kinase binding subunit FakB1 -
  NW957_RS03640 (NW957_03640) comFA 763030..764112 (+) 1083 WP_165469083.1 DEAD/DEAH box helicase Machinery gene
  NW957_RS03645 (NW957_03645) - 764105..764779 (+) 675 WP_001057965.1 ComF family protein -
  NW957_RS03650 (NW957_03650) raiA 764840..765412 (+) 573 WP_000617735.1 ribosome-associated translation inhibitor RaiA -
  NW957_RS03655 (NW957_03655) secA 765826..768357 (+) 2532 WP_000506531.1 preprotein translocase subunit SecA -
  NW957_RS03660 (NW957_03660) - 768399..768497 (+) 99 WP_031789464.1 hypothetical protein -

Sequence

Protein


Download         Length: 360 a.a.        Molecular weight: 42074.52 Da        Isoelectric Point: 9.6864

>NTDB_id=620746 NW957_RS03640 WP_165469083.1 763030..764112(+) (comFA) [Staphylococcus aureus strain 27-G-H]
MDNVTRYKITESSQSSSQAYYHLSFELSEQQSYASEHIVRAIRMRQTILLYAVTGAGKTEMMFQGIQYARRQGDNIAIVS
PRVDVVVEISKRIKDAFLNEDIDILHQQSSQQFEGHFVVCTVHQLYRFKQHFDTIFIDEVDAFPLSMDKNLQQALKSSSK
VEHATIYMTATPPKQLLSEIPHENIIKLPARFHKKSLPVPKYRYFKLNNNKIQKMLYRILQDQINNQRYTLVFFNNIETM
IKTFSVYKQKITKLTYVHSEDVFRFEKVEQLRNGHFDVIFTTTILERGFTMANLDVVVIDAHQYTQEALIQIAGRVGRKL
ECPTGKVLFFHEGVSMNMIQAKKEIQRMNKLALKRGWIDE

Nucleotide


Download         Length: 1083 bp        

>NTDB_id=620746 NW957_RS03640 WP_165469083.1 763030..764112(+) (comFA) [Staphylococcus aureus strain 27-G-H]
ATGGATAATGTAACAAGATATAAAATAACAGAGAGTTCGCAAAGTTCATCACAAGCATATTATCATCTCTCATTTGAATT
GTCGGAACAGCAGTCTTATGCCTCAGAACATATTGTTCGAGCCATTAGAATGAGACAAACGATTTTGTTATATGCCGTAA
CAGGTGCAGGTAAGACAGAAATGATGTTTCAAGGCATTCAATATGCAAGACGACAGGGAGATAATATAGCTATTGTGTCA
CCGCGTGTAGATGTTGTTGTAGAAATTAGTAAACGTATTAAAGACGCATTTCTTAATGAAGATATAGACATACTACACCA
GCAATCAAGTCAACAATTTGAAGGGCATTTTGTTGTATGCACAGTACATCAACTTTACCGATTCAAACAGCACTTTGATA
CTATTTTTATTGATGAAGTCGATGCCTTTCCTTTATCAATGGATAAAAATCTACAACAAGCATTGAAGTCATCTTCTAAA
GTTGAACATGCAACAATTTATATGACAGCAACACCACCGAAACAACTTCTGTCAGAGATTCCCCACGAAAATATAATTAA
ATTGCCAGCTCGCTTTCATAAAAAATCACTTCCAGTTCCTAAATATCGTTATTTCAAACTTAATAATAATAAGATTCAGA
AAATGTTATACCGAATTTTACAAGATCAAATTAATAATCAACGTTATACACTGGTGTTTTTTAACAATATAGAAACAATG
ATTAAAACATTTTCGGTTTATAAGCAGAAAATTACTAAATTAACATACGTCCATAGCGAGGATGTTTTTCGCTTTGAAAA
AGTTGAACAATTAAGGAATGGACATTTCGATGTCATTTTTACTACGACAATATTAGAACGTGGATTTACAATGGCAAATT
TGGATGTTGTTGTTATCGATGCACATCAATATACTCAAGAGGCTTTAATACAAATTGCTGGACGTGTTGGACGAAAATTA
GAATGTCCTACTGGAAAAGTATTGTTTTTTCATGAAGGAGTAAGTATGAATATGATTCAAGCTAAAAAAGAGATTCAAAG
GATGAACAAATTAGCATTAAAAAGAGGTTGGATTGATGAATAA

Domains

Predicted by InterProScan.

Type III restriction enzyme, res subunit (ResIII)

(25-173)

Helicase conserved C-terminal domain (Helicase_C)

(215-318)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

38.938

94.167

0.367