Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbB   Type   Machinery gene
Locus tag   LIT37_RS21210 Genome accession   NZ_CP085714
Coordinates   4268706..4269068 (-) Length   120 a.a.
NCBI ID   WP_119115756.1    Uniprot ID   -
Organism   Peribacillus asahii strain CK1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4263706..4274068
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LIT37_RS21195 (LIT37_21240) - 4264507..4267371 (+) 2865 WP_119117562.1 DEAD/DEAH box helicase -
  LIT37_RS21200 (LIT37_21245) - 4267487..4267723 (-) 237 WP_252287502.1 hypothetical protein -
  LIT37_RS21205 (LIT37_21250) - 4268481..4268684 (-) 204 WP_252287503.1 hypothetical protein -
  LIT37_RS21210 (LIT37_21255) ssbB 4268706..4269068 (-) 363 WP_119115756.1 single-stranded DNA-binding protein Machinery gene
  LIT37_RS21215 (LIT37_21260) - 4269388..4269822 (+) 435 WP_252287504.1 YwpF-like family protein -
  LIT37_RS21220 (LIT37_21265) - 4269951..4270271 (-) 321 WP_252287506.1 hypothetical protein -
  LIT37_RS21225 (LIT37_21270) fabZ 4270389..4270820 (-) 432 WP_119115758.1 3-hydroxyacyl-ACP dehydratase FabZ -
  LIT37_RS21230 (LIT37_21275) - 4270854..4271105 (-) 252 WP_127762184.1 DNA-directed RNA polymerase subunit beta -
  LIT37_RS21235 (LIT37_21280) - 4271213..4272046 (-) 834 WP_252287507.1 flagellar hook-basal body protein -
  LIT37_RS21240 (LIT37_21285) - 4272082..4272918 (-) 837 WP_119115761.1 flagellar hook-basal body protein -

Sequence

Protein


Download         Length: 120 a.a.        Molecular weight: 13646.56 Da        Isoelectric Point: 9.3998

>NTDB_id=619552 LIT37_RS21210 WP_119115756.1 4268706..4269068(-) (ssbB) [Peribacillus asahii strain CK1]
MINQVTLVGRLTKDPELRYTADGKAVSNVTIAVNRPFRNQAGEYDADFVQCTLWRKTAENTVQYCRRGSMIGITGRIQTR
RYENQEGKQVYVTEVVAEMVQFVGPRKLDVPKQAYESIGL

Nucleotide


Download         Length: 363 bp        

>NTDB_id=619552 LIT37_RS21210 WP_119115756.1 4268706..4269068(-) (ssbB) [Peribacillus asahii strain CK1]
TTGATTAACCAAGTAACCCTGGTTGGACGCTTGACGAAAGATCCTGAGTTGCGGTACACAGCAGATGGGAAAGCTGTTTC
GAATGTAACGATTGCGGTGAATCGTCCTTTTCGAAATCAAGCTGGTGAATATGATGCTGATTTTGTGCAATGCACGCTAT
GGAGGAAAACGGCTGAAAATACGGTCCAATATTGTCGGCGCGGCTCAATGATTGGGATTACTGGAAGAATCCAGACACGT
CGTTATGAGAATCAAGAGGGTAAGCAAGTATATGTAACAGAAGTAGTGGCTGAAATGGTTCAGTTTGTTGGACCGAGGAA
GTTAGACGTTCCAAAGCAAGCATATGAGTCTATTGGCTTGTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbB Bacillus subtilis subsp. subtilis str. 168

66.038

88.333

0.583
  ssbA Bacillus subtilis subsp. subtilis str. 168

58.879

89.167

0.525
  ssb Latilactobacillus sakei subsp. sakei 23K

52.83

88.333

0.467
  ssbB Streptococcus sobrinus strain NIDR 6715-7

45.283

88.333

0.4
  ssbB/cilA Streptococcus mitis NCTC 12261

45.283

88.333

0.4
  ssbB/cilA Streptococcus pneumoniae TIGR4

45.283

88.333

0.4
  ssbB/cilA Streptococcus pneumoniae Rx1

44.34

88.333

0.392
  ssbB/cilA Streptococcus pneumoniae D39

44.34

88.333

0.392
  ssbB/cilA Streptococcus pneumoniae R6

44.34

88.333

0.392
  ssbB/cilA Streptococcus mitis SK321

44.34

88.333

0.392
  ssbA Streptococcus mutans UA159

43.396

88.333

0.383
  ssb Vibrio cholerae strain A1552

40.179

93.333

0.375