Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   HQG80_RS10350 Genome accession   NZ_CP085506
Coordinates   2000022..2000357 (+) Length   111 a.a.
NCBI ID   WP_000982017.1    Uniprot ID   A0A9W5L6E7
Organism   Bacillus cereus strain HD2.4     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1995022..2005357
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HQG80_RS10325 (HQG80_010325) - 1995217..1996044 (-) 828 WP_000499733.1 hypothetical protein -
  HQG80_RS10330 (HQG80_010330) - 1996154..1996801 (+) 648 WP_173602483.1 HD domain-containing protein -
  HQG80_RS10335 (HQG80_010335) - 1996798..1998693 (+) 1896 WP_000783160.1 ABC-F family ATP-binding cassette domain-containing protein -
  HQG80_RS10340 (HQG80_010340) - 1998769..1999500 (+) 732 WP_001260655.1 Bax inhibitor-1/YccA family protein -
  HQG80_RS10345 (HQG80_010345) - 1999606..1999860 (+) 255 WP_000975138.1 DUF4318 domain-containing protein -
  HQG80_RS10350 (HQG80_010350) ssbA 2000022..2000357 (+) 336 WP_000982017.1 single-stranded DNA-binding protein Machinery gene
  HQG80_RS10355 (HQG80_010355) - 2000606..2001733 (+) 1128 WP_017657463.1 conserved virulence factor C family protein -
  HQG80_RS10360 (HQG80_010360) - 2001737..2002120 (+) 384 WP_000634884.1 DCC1-like thiol-disulfide oxidoreductase family protein -
  HQG80_RS10365 (HQG80_010365) - 2002204..2002638 (+) 435 WP_000063706.1 BrxA/BrxB family bacilliredoxin -
  HQG80_RS10370 (HQG80_010370) - 2002688..2003464 (+) 777 WP_000637455.1 class I SAM-dependent methyltransferase -

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 12797.69 Da        Isoelectric Point: 9.4344

>NTDB_id=618675 HQG80_RS10350 WP_000982017.1 2000022..2000357(+) (ssbA) [Bacillus cereus strain HD2.4]
MMNRVVLIGRLTKEPELYYTKQGVAYARICVAVNRGFRNSLGEQQVDFINCVVWRKSAENVTEYCKKGSLVGITGRIQTS
NYDDEQGKRIYRTEVVIESITFLERRREGAL

Nucleotide


Download         Length: 336 bp        

>NTDB_id=618675 HQG80_RS10350 WP_000982017.1 2000022..2000357(+) (ssbA) [Bacillus cereus strain HD2.4]
ATGATGAATCGAGTTGTATTAATCGGTAGATTGACAAAGGAGCCAGAATTATACTACACAAAACAAGGCGTCGCTTATGC
ACGAATATGTGTTGCGGTGAATAGAGGATTTCGAAATAGTTTAGGTGAACAACAAGTCGATTTTATTAATTGTGTCGTTT
GGCGCAAATCGGCTGAGAATGTAACTGAATATTGTAAGAAGGGGTCGCTCGTTGGGATTACAGGGCGTATTCAGACTAGT
AATTACGATGATGAACAAGGCAAGAGAATATATAGAACTGAAGTTGTGATTGAGAGTATTACCTTTTTGGAGAGAAGGCG
GGAGGGGGCATTGTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

58.491

95.495

0.559
  ssb Latilactobacillus sakei subsp. sakei 23K

55.66

95.495

0.532
  ssbB Bacillus subtilis subsp. subtilis str. 168

51.351

100

0.514
  ssbB Lactococcus lactis subsp. cremoris KW2

45.455

99.099

0.45
  ssbB Streptococcus sobrinus strain NIDR 6715-7

44.144

100

0.441
  ssbA Streptococcus mutans UA159

39.64

100

0.396
  ssbB/cilA Streptococcus mitis NCTC 12261

39.64

100

0.396
  ssbB/cilA Streptococcus pneumoniae TIGR4

39.64

100

0.396
  ssbB/cilA Streptococcus pneumoniae D39

38.739

100

0.387
  ssbB/cilA Streptococcus pneumoniae R6

38.739

100

0.387
  ssbB/cilA Streptococcus mitis SK321

38.739

100

0.387
  ssbB/cilA Streptococcus pneumoniae Rx1

38.739

100

0.387