Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   LIT28_RS10620 Genome accession   NZ_CP085409
Coordinates   2066149..2066487 (+) Length   112 a.a.
NCBI ID   WP_098264272.1    Uniprot ID   A0A6I7XK51
Organism   Bacillus thuringiensis strain KF1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2061149..2071487
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LIT28_RS10595 (LIT28_10595) - 2061373..2062173 (-) 801 WP_242251741.1 hypothetical protein -
  LIT28_RS10600 (LIT28_10600) - 2062283..2062930 (+) 648 WP_242251743.1 HD domain-containing protein -
  LIT28_RS10605 (LIT28_10605) - 2062927..2064822 (+) 1896 WP_242251745.1 ABC-F family ATP-binding cassette domain-containing protein -
  LIT28_RS10610 (LIT28_10610) - 2064898..2065629 (+) 732 WP_242251746.1 Bax inhibitor-1/YccA family protein -
  LIT28_RS10615 (LIT28_10615) - 2065736..2065990 (+) 255 WP_242251748.1 DUF4318 domain-containing protein -
  LIT28_RS10620 (LIT28_10620) ssbA 2066149..2066487 (+) 339 WP_098264272.1 single-stranded DNA-binding protein Machinery gene
  LIT28_RS10625 (LIT28_10625) - 2066652..2067779 (+) 1128 WP_242251749.1 conserved virulence factor C family protein -
  LIT28_RS10630 (LIT28_10630) - 2067783..2068166 (+) 384 WP_063223264.1 DCC1-like thiol-disulfide oxidoreductase family protein -
  LIT28_RS10635 (LIT28_10635) - 2068250..2068684 (+) 435 WP_000063705.1 BrxA/BrxB family bacilliredoxin -
  LIT28_RS10640 (LIT28_10640) - 2068734..2069510 (+) 777 WP_242251751.1 class I SAM-dependent methyltransferase -

Sequence

Protein


Download         Length: 112 a.a.        Molecular weight: 12899.72 Da        Isoelectric Point: 9.0926

>NTDB_id=617868 LIT28_RS10620 WP_098264272.1 2066149..2066487(+) (ssbA) [Bacillus thuringiensis strain KF1]
MMNRVVLIGRLTKEPELYYTKQGVAYARVCVAVNRGFRNSLGEQQVDFINCVVWRKSAENVTEYCTKGSLVGITGRIHTS
NYDDEQGKRIYRTEVMIESITFLERRREGASQ

Nucleotide


Download         Length: 339 bp        

>NTDB_id=617868 LIT28_RS10620 WP_098264272.1 2066149..2066487(+) (ssbA) [Bacillus thuringiensis strain KF1]
ATGATGAATCGAGTTGTATTAATCGGTAGATTGACAAAGGAGCCAGAATTATACTACACAAAGCAAGGCGTCGCTTATGC
ACGAGTATGTGTTGCGGTGAATAGAGGTTTTCGAAATAGTTTAGGTGAGCAACAAGTAGATTTTATTAATTGTGTCGTTT
GGCGAAAATCGGCTGAGAATGTAACTGAATATTGTACGAAGGGGTCTCTTGTTGGGATTACAGGGCGTATTCATACGAGT
AATTACGACGATGAACAAGGAAAGAGAATATATAGAACGGAAGTTATGATTGAGAGTATTACCTTTTTGGAGAGAAGACG
GGAGGGCGCATCGCAATAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6I7XK51

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

56.604

94.643

0.536
  ssb Latilactobacillus sakei subsp. sakei 23K

50.42

100

0.536
  ssbB Bacillus subtilis subsp. subtilis str. 168

50.442

100

0.509
  ssbB Lactococcus lactis subsp. cremoris KW2

45.714

93.75

0.429
  ssbB Streptococcus sobrinus strain NIDR 6715-7

42.727

98.214

0.42
  ssbA Streptococcus mutans UA159

40.909

98.214

0.402
  ssbB/cilA Streptococcus mitis NCTC 12261

40.909

98.214

0.402
  ssbB/cilA Streptococcus pneumoniae TIGR4

40.909

98.214

0.402
  ssbB/cilA Streptococcus pneumoniae D39

40

98.214

0.393
  ssbB/cilA Streptococcus pneumoniae R6

40

98.214

0.393
  ssbB/cilA Streptococcus mitis SK321

40

98.214

0.393
  ssbB/cilA Streptococcus pneumoniae Rx1

40

98.214

0.393