Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   LIT24_RS10610 Genome accession   NZ_CP085406
Coordinates   2040948..2041283 (+) Length   111 a.a.
NCBI ID   WP_000982014.1    Uniprot ID   A0A9W5QVD6
Organism   Bacillus bombysepticus strain F12     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2035948..2046283
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LIT24_RS10585 (LIT24_10585) - 2036142..2036969 (-) 828 WP_098963520.1 hypothetical protein -
  LIT24_RS10590 (LIT24_10590) - 2037079..2037726 (+) 648 WP_000165966.1 HD domain-containing protein -
  LIT24_RS10595 (LIT24_10595) - 2037723..2039618 (+) 1896 WP_000783169.1 ABC-F family ATP-binding cassette domain-containing protein -
  LIT24_RS10600 (LIT24_10600) - 2039694..2040425 (+) 732 WP_001260655.1 Bax inhibitor-1/YccA family protein -
  LIT24_RS10605 (LIT24_10605) - 2040532..2040786 (+) 255 WP_098963518.1 DUF4318 domain-containing protein -
  LIT24_RS10610 (LIT24_10610) ssbA 2040948..2041283 (+) 336 WP_000982014.1 single-stranded DNA-binding protein Machinery gene
  LIT24_RS10615 (LIT24_10615) - 2041644..2041862 (+) 219 WP_000739870.1 hypothetical protein -
  LIT24_RS10620 (LIT24_10620) - 2042208..2043335 (+) 1128 WP_000692580.1 conserved virulence factor C family protein -
  LIT24_RS10625 (LIT24_10625) - 2043339..2043722 (+) 384 WP_000634887.1 DCC1-like thiol-disulfide oxidoreductase family protein -
  LIT24_RS10630 (LIT24_10630) - 2043806..2044240 (+) 435 WP_000063706.1 BrxA/BrxB family bacilliredoxin -
  LIT24_RS10635 (LIT24_10635) - 2044290..2045066 (+) 777 WP_000637458.1 class I SAM-dependent methyltransferase -

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 12741.59 Da        Isoelectric Point: 9.4344

>NTDB_id=617820 LIT24_RS10610 WP_000982014.1 2040948..2041283(+) (ssbA) [Bacillus bombysepticus strain F12]
MMNRVVLIGRLTKEPELYYTKQGVAYARICVAVNRGFRNSLGEQQVDFINCVVWRKSAENVAEYCKKGSLVGITGRIQTS
NYDDEQGKRIYRTEVVIESITFLERRREGAS

Nucleotide


Download         Length: 336 bp        

>NTDB_id=617820 LIT24_RS10610 WP_000982014.1 2040948..2041283(+) (ssbA) [Bacillus bombysepticus strain F12]
ATGATGAATCGAGTTGTATTAATCGGTAGATTGACAAAGGAGCCAGAATTATACTACACAAAACAAGGCGTCGCTTATGC
ACGGATATGTGTTGCGGTGAATAGAGGATTTCGAAATAGTTTAGGTGAACAACAAGTCGATTTTATTAATTGTGTCGTTT
GGCGCAAATCGGCTGAGAATGTAGCTGAATATTGTAAGAAGGGGTCGCTCGTTGGGATTACAGGGCGTATTCAGACTAGT
AATTACGATGATGAACAAGGCAAGAGAATATATAGAACTGAAGTTGTGATTGAGAGTATTACCTTTTTGGAGAGAAGGCG
GGAGGGGGCATCGTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

59.434

95.495

0.568
  ssb Latilactobacillus sakei subsp. sakei 23K

56.604

95.495

0.541
  ssbB Bacillus subtilis subsp. subtilis str. 168

51.786

100

0.523
  ssbB Lactococcus lactis subsp. cremoris KW2

45.714

94.595

0.432
  ssbB Streptococcus sobrinus strain NIDR 6715-7

43.636

99.099

0.432
  ssbA Streptococcus mutans UA159

40.909

99.099

0.405
  ssbB/cilA Streptococcus mitis NCTC 12261

40.909

99.099

0.405
  ssbB/cilA Streptococcus pneumoniae TIGR4

40.909

99.099

0.405
  ssbB/cilA Streptococcus pneumoniae D39

40

99.099

0.396
  ssbB/cilA Streptococcus pneumoniae R6

40

99.099

0.396
  ssbB/cilA Streptococcus mitis SK321

40

99.099

0.396
  ssbB/cilA Streptococcus pneumoniae Rx1

40

99.099

0.396