Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   LIS81_RS10750 Genome accession   NZ_CP085399
Coordinates   2077402..2077737 (+) Length   111 a.a.
NCBI ID   WP_226638817.1    Uniprot ID   -
Organism   Bacillus tropicus strain CK18     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2072402..2082737
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LIS81_RS10725 (LIS81_10730) - 2072667..2073428 (-) 762 WP_252211265.1 hypothetical protein -
  LIS81_RS10730 (LIS81_10735) - 2073538..2074185 (+) 648 WP_000163595.1 HD domain-containing protein -
  LIS81_RS10735 (LIS81_10740) - 2074182..2076077 (+) 1896 WP_226638815.1 ABC-F family ATP-binding cassette domain-containing protein -
  LIS81_RS10740 (LIS81_10745) - 2076153..2076884 (+) 732 WP_001260645.1 Bax inhibitor-1/YccA family protein -
  LIS81_RS10745 (LIS81_10750) - 2076989..2077243 (+) 255 WP_000975123.1 DUF4318 domain-containing protein -
  LIS81_RS10750 (LIS81_10755) ssbA 2077402..2077737 (+) 336 WP_226638817.1 single-stranded DNA-binding protein Machinery gene
  LIS81_RS10755 (LIS81_10760) - 2078286..2079413 (+) 1128 WP_000692584.1 conserved virulence factor C family protein -
  LIS81_RS10760 (LIS81_10765) - 2079417..2079800 (+) 384 WP_000634879.1 DCC1-like thiol-disulfide oxidoreductase family protein -
  LIS81_RS10765 (LIS81_10770) - 2079884..2080318 (+) 435 WP_000063713.1 BrxA/BrxB family bacilliredoxin -
  LIS81_RS10770 (LIS81_10775) - 2080368..2081144 (+) 777 WP_242275280.1 class I SAM-dependent methyltransferase -

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 12757.63 Da        Isoelectric Point: 9.6865

>NTDB_id=617724 LIS81_RS10750 WP_226638817.1 2077402..2077737(+) (ssbA) [Bacillus tropicus strain CK18]
MMNRVVLIGRLTKEPELYYTKQGAAYARICIAVNRGFRNSLGEKQVDFINCVVWRKSAENVTEYCKKGSLVGITGRIQTS
NYDDEQGKRIYRTEVVIESITFLERRREGAS

Nucleotide


Download         Length: 336 bp        

>NTDB_id=617724 LIS81_RS10750 WP_226638817.1 2077402..2077737(+) (ssbA) [Bacillus tropicus strain CK18]
ATGATGAATCGAGTTGTATTAATCGGTAGATTGACAAAGGAGCCAGAATTATACTACACAAAACAAGGCGCCGCTTATGC
AAGAATATGTATTGCGGTGAATAGAGGATTTCGAAATAGTTTAGGTGAAAAACAAGTCGATTTTATTAATTGTGTCGTTT
GGCGAAAATCGGCTGAGAATGTAACTGAATATTGTAAGAAGGGGTCACTTGTTGGGATTACAGGGCGTATTCAGACGAGT
AATTACGATGATGAACAAGGCAAGAGAATATATAGAACTGAAGTTGTGATTGAGAGTATTACCTTTTTGGAGAGAAGGCG
GGAGGGGGCATCGTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

59.434

95.495

0.568
  ssb Latilactobacillus sakei subsp. sakei 23K

56.604

95.495

0.541
  ssbB Bacillus subtilis subsp. subtilis str. 168

51.786

100

0.523
  ssbB Lactococcus lactis subsp. cremoris KW2

45.714

94.595

0.432
  ssbB Streptococcus sobrinus strain NIDR 6715-7

43.636

99.099

0.432
  ssbA Streptococcus mutans UA159

40.909

99.099

0.405
  ssbB/cilA Streptococcus mitis NCTC 12261

40.909

99.099

0.405
  ssbB/cilA Streptococcus pneumoniae TIGR4

40.909

99.099

0.405
  ssbB/cilA Streptococcus pneumoniae D39

40

99.099

0.396
  ssbB/cilA Streptococcus pneumoniae R6

40

99.099

0.396
  ssbB/cilA Streptococcus mitis SK321

40

99.099

0.396
  ssbB/cilA Streptococcus pneumoniae Rx1

40

99.099

0.396