Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbB   Type   Machinery gene
Locus tag   LIT38_RS25130 Genome accession   NZ_CP085394
Coordinates   5047184..5047552 (-) Length   122 a.a.
NCBI ID   WP_252216508.1    Uniprot ID   -
Organism   Bacillus sp. CMF12     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 5042184..5052552
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LIT38_RS25115 (LIT38_25145) - 5043542..5046361 (+) 2820 WP_252216503.1 DEAD/DEAH box helicase -
  LIT38_RS25120 (LIT38_25150) - 5046369..5046755 (-) 387 WP_243506142.1 hypothetical protein -
  LIT38_RS25125 (LIT38_25155) - 5046996..5047178 (-) 183 WP_243509678.1 hypothetical protein -
  LIT38_RS25130 (LIT38_25160) ssbB 5047184..5047552 (-) 369 WP_252216508.1 single-stranded DNA-binding protein Machinery gene
  LIT38_RS25135 (LIT38_25165) - 5047819..5048277 (+) 459 WP_243506144.1 YwpF-like family protein -
  LIT38_RS25140 (LIT38_25170) - 5048326..5048619 (-) 294 WP_243506145.1 hypothetical protein -
  LIT38_RS25145 (LIT38_25175) fabZ 5048757..5049185 (-) 429 WP_009332168.1 3-hydroxyacyl-ACP dehydratase FabZ -
  LIT38_RS25150 (LIT38_25180) - 5049372..5049641 (-) 270 WP_243506146.1 DNA-directed RNA polymerase subunit beta -
  LIT38_RS25155 (LIT38_25185) - 5049659..5050486 (-) 828 WP_243506147.1 flagellar hook-basal body protein -
  LIT38_RS25160 (LIT38_25190) - 5050521..5051360 (-) 840 WP_243506148.1 flagellar hook-basal body protein -

Sequence

Protein


Download         Length: 122 a.a.        Molecular weight: 14140.17 Da        Isoelectric Point: 9.7599

>NTDB_id=617533 LIT38_RS25130 WP_252216508.1 5047184..5047552(-) (ssbB) [Bacillus sp. CMF12]
MINQVTLVGRLTRDPELKRTQEGIPVTNVTLAVNRQYRNQKGEIDADFVQCTLWKKSAENTSQYCRKGALIGITGRIQTR
HYDNQEKKRIYVTEVVAESVRFLDRKKTEEIPVTVTKEELPF

Nucleotide


Download         Length: 369 bp        

>NTDB_id=617533 LIT38_RS25130 WP_252216508.1 5047184..5047552(-) (ssbB) [Bacillus sp. CMF12]
ATGATTAATCAAGTGACCCTGGTTGGAAGACTGACAAGGGATCCTGAGCTGAAACGGACACAGGAAGGAATTCCGGTGAC
AAATGTGACGCTGGCAGTAAACCGCCAATACCGCAACCAGAAGGGTGAAATCGATGCGGACTTTGTGCAGTGCACTTTAT
GGAAAAAATCAGCGGAAAATACATCGCAATATTGCCGGAAAGGAGCGCTGATCGGGATAACCGGGCGAATTCAGACGAGG
CATTATGATAATCAGGAAAAGAAACGCATTTATGTAACAGAGGTGGTAGCGGAATCGGTACGCTTTCTTGACCGGAAAAA
GACAGAGGAAATCCCGGTGACCGTGACCAAGGAGGAATTGCCATTTTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbB Bacillus subtilis subsp. subtilis str. 168

60

90.164

0.541
  ssbA Bacillus subtilis subsp. subtilis str. 168

54.206

87.705

0.475
  ssb Latilactobacillus sakei subsp. sakei 23K

50

90.164

0.451
  ssbB Streptococcus sobrinus strain NIDR 6715-7

39.394

100

0.426
  ssbA Streptococcus mutans UA159

37.879

100

0.41
  ssbB/cilA Streptococcus pneumoniae TIGR4

37.121

100

0.402
  ssbB/cilA Streptococcus mitis NCTC 12261

37.121

100

0.402
  ssbB/cilA Streptococcus pneumoniae Rx1

36.364

100

0.393
  ssbB/cilA Streptococcus pneumoniae D39

36.364

100

0.393
  ssbB/cilA Streptococcus pneumoniae R6

36.364

100

0.393
  ssbB/cilA Streptococcus mitis SK321

36.364

100

0.393
  ssbB Lactococcus lactis subsp. cremoris KW2

42.056

87.705

0.369