Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   NUT86_RS22535 Genome accession   NZ_CP102609
Coordinates   5311074..5311673 (+) Length   199 a.a.
NCBI ID   WP_018089931.1    Uniprot ID   A0A0P4R2A1
Organism   Streptomyces sp. G7(2002)     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5306074..5316673
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NUT86_RS22510 (NUT86_22550) - 5306311..5307477 (+) 1167 WP_274737305.1 serine hydrolase domain-containing protein -
  NUT86_RS22525 (NUT86_22565) - 5308022..5310505 (+) 2484 WP_274737306.1 DNA polymerase III subunit gamma and tau -
  NUT86_RS22530 (NUT86_22570) - 5310672..5311022 (+) 351 WP_078518632.1 YbaB/EbfC family nucleoid-associated protein -
  NUT86_RS22535 (NUT86_22575) recR 5311074..5311673 (+) 600 WP_018089931.1 recombination mediator RecR Machinery gene
  NUT86_RS22540 (NUT86_22580) - 5311666..5312331 (+) 666 WP_159487121.1 DUF5063 domain-containing protein -
  NUT86_RS22545 (NUT86_22585) - 5312676..5313947 (+) 1272 WP_018089933.1 aspartate kinase -
  NUT86_RS22550 (NUT86_22590) - 5313944..5315059 (+) 1116 WP_018089934.1 aspartate-semialdehyde dehydrogenase -
  NUT86_RS22555 (NUT86_22595) - 5315550..5316212 (+) 663 WP_174857682.1 SigE family RNA polymerase sigma factor -

Sequence

Protein


Download         Length: 199 a.a.        Molecular weight: 21790.14 Da        Isoelectric Point: 4.9909

>NTDB_id=617533 NUT86_RS22535 WP_018089931.1 5311074..5311673(+) (recR) [Streptomyces sp. G7(2002)]
MYEGVVQDLIDELGRLPGVGPKSAQRIAFHILQAEPTDVRRLANALMEVKAKVRFCGTCGNVAQEEQCRVCLDPRRDPAV
ICVVEEPKDVVAIERTREFRGRYHVLGGAISPIEGVGPDDLRIRELLARLADGTVTELILATDPNLEGEATATYLARMIK
PMGLRVTRLASGLPVGGDLEYADEVTLGRAFEGRRLLDV

Nucleotide


Download         Length: 600 bp        

>NTDB_id=617533 NUT86_RS22535 WP_018089931.1 5311074..5311673(+) (recR) [Streptomyces sp. G7(2002)]
GTGTATGAAGGCGTGGTCCAGGACCTGATCGACGAGTTGGGCAGGCTGCCCGGCGTCGGTCCCAAGAGCGCGCAGCGGAT
CGCCTTCCACATTCTTCAGGCCGAGCCGACCGATGTCCGCCGGCTCGCGAACGCGCTGATGGAGGTCAAGGCGAAGGTCC
GGTTCTGCGGCACCTGCGGCAATGTGGCGCAGGAGGAGCAGTGCCGGGTCTGCCTGGACCCGAGGCGCGATCCGGCGGTC
ATCTGCGTCGTGGAGGAGCCCAAGGACGTCGTGGCGATCGAGCGGACCCGCGAGTTCCGCGGTCGCTACCACGTCCTCGG
TGGGGCGATCAGCCCGATCGAGGGCGTGGGCCCCGACGACCTGCGGATCAGGGAACTGCTGGCCAGGCTCGCGGACGGCA
CCGTCACCGAGCTGATTCTGGCCACCGACCCGAATCTGGAGGGCGAGGCCACGGCCACGTATCTGGCCCGCATGATCAAA
CCCATGGGCCTGAGAGTGACGCGACTGGCGAGCGGACTGCCGGTCGGCGGCGATCTGGAGTACGCGGACGAGGTCACGCT
CGGGCGGGCCTTCGAAGGGAGGAGACTTCTCGATGTCTGA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(38-77)

Helix-hairpin-helix motif (HHH)

(2-27)

Toprim domain (Toprim_4)

(80-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0P4R2A1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Bacillus subtilis subsp. subtilis str. 168

54.082

98.492

0.533
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

54.639

97.487

0.533
  recR Streptococcus pneumoniae R6

45.876

97.487

0.447