Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbB   Type   Machinery gene
Locus tag   LIS77_RS23410 Genome accession   NZ_CP085390
Coordinates   4651433..4651801 (-) Length   122 a.a.
NCBI ID   WP_252220313.1    Uniprot ID   -
Organism   Cytobacillus firmus strain CK19     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4646433..4656801
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LIS77_RS23390 (LIS77_23420) - 4647160..4649979 (+) 2820 WP_252220307.1 DEAD/DEAH box helicase -
  LIS77_RS23395 (LIS77_23425) - 4649987..4650373 (-) 387 WP_252220310.1 hypothetical protein -
  LIS77_RS23400 (LIS77_23430) - 4650579..4650980 (+) 402 WP_163142370.1 helix-turn-helix transcriptional regulator -
  LIS77_RS23405 (LIS77_23435) - 4651236..4651427 (-) 192 WP_248350271.1 hypothetical protein -
  LIS77_RS23410 (LIS77_23440) ssbB 4651433..4651801 (-) 369 WP_252220313.1 single-stranded DNA-binding protein Machinery gene
  LIS77_RS23415 (LIS77_23445) - 4652068..4652526 (+) 459 WP_248349967.1 YwpF-like family protein -
  LIS77_RS23420 (LIS77_23450) - 4652547..4652921 (-) 375 WP_252220316.1 hypothetical protein -
  LIS77_RS23425 (LIS77_23455) fabZ 4652990..4653418 (-) 429 WP_048007971.1 3-hydroxyacyl-ACP dehydratase FabZ -
  LIS77_RS23430 (LIS77_23460) - 4653543..4653812 (-) 270 WP_159346421.1 DNA-directed RNA polymerase subunit beta -
  LIS77_RS23435 (LIS77_23465) - 4653831..4654658 (-) 828 WP_252220319.1 flagellar hook-basal body protein -
  LIS77_RS23440 (LIS77_23470) - 4654693..4655532 (-) 840 WP_252222533.1 flagellar hook-basal body protein -
  LIS77_RS23445 (LIS77_23475) - 4655739..4656740 (-) 1002 WP_248349981.1 rod shape-determining protein -

Sequence

Protein


Download         Length: 122 a.a.        Molecular weight: 14137.21 Da        Isoelectric Point: 9.7403

>NTDB_id=617425 LIS77_RS23410 WP_252220313.1 4651433..4651801(-) (ssbB) [Cytobacillus firmus strain CK19]
MINQVTLVGRLTKDPELKRTQEGIPVTNVTLAVNRQYRNQKGEIDADFVQCTLWKKTAENTSQYCRKGTLIGVTGRIHTR
HYDNQEKKRIYVTEVVAESVRFLERKKAEDILVTVTKEELPF

Nucleotide


Download         Length: 369 bp        

>NTDB_id=617425 LIS77_RS23410 WP_252220313.1 4651433..4651801(-) (ssbB) [Cytobacillus firmus strain CK19]
ATGATCAATCAAGTGACCCTGGTCGGAAGGCTGACAAAGGATCCTGAGCTGAAAAGGACACAGGAGGGAATTCCGGTAAC
AAATGTGACACTGGCAGTTAACCGCCAGTACCGCAACCAGAAGGGTGAAATCGATGCAGATTTTGTGCAGTGCACCTTAT
GGAAGAAAACGGCTGAAAATACATCTCAGTATTGCCGGAAAGGAACCCTGATTGGAGTAACCGGGCGGATCCATACAAGG
CATTATGATAATCAGGAAAAGAAGCGCATTTATGTAACAGAGGTGGTAGCGGAATCCGTCCGCTTTCTTGAACGGAAGAA
GGCAGAGGACATTCTGGTGACTGTAACCAAGGAGGAGCTTCCGTTTTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbB Bacillus subtilis subsp. subtilis str. 168

61.062

92.623

0.566
  ssbA Bacillus subtilis subsp. subtilis str. 168

56.075

87.705

0.492
  ssbB Streptococcus sobrinus strain NIDR 6715-7

41.667

100

0.451
  ssbA Streptococcus mutans UA159

40.152

100

0.434
  ssb Latilactobacillus sakei subsp. sakei 23K

49.057

86.885

0.426
  ssbB/cilA Streptococcus pneumoniae TIGR4

39.394

100

0.426
  ssbB/cilA Streptococcus mitis NCTC 12261

39.394

100

0.426
  ssbB/cilA Streptococcus mitis SK321

38.636

100

0.418
  ssbB/cilA Streptococcus pneumoniae D39

38.636

100

0.418
  ssbB/cilA Streptococcus pneumoniae Rx1

38.636

100

0.418
  ssbB/cilA Streptococcus pneumoniae R6

38.636

100

0.418
  ssbB Lactococcus lactis subsp. cremoris KW2

42.857

86.066

0.369