Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbB   Type   Machinery gene
Locus tag   LG298_RS24825 Genome accession   NZ_CP085255
Coordinates   4947227..4947595 (-) Length   122 a.a.
NCBI ID   WP_282173737.1    Uniprot ID   -
Organism   Cytobacillus firmus strain ABH-509     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4942227..4952595
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LG298_RS24805 (LG298_24625) - 4942967..4945786 (+) 2820 WP_404322837.1 DEAD/DEAH box helicase -
  LG298_RS24810 (LG298_24630) - 4945794..4946180 (-) 387 WP_226618724.1 hypothetical protein -
  LG298_RS24815 (LG298_24635) - 4946385..4946786 (+) 402 WP_404322838.1 helix-turn-helix domain-containing protein -
  LG298_RS24820 (LG298_24640) - 4947030..4947221 (-) 192 WP_283935831.1 hypothetical protein -
  LG298_RS24825 (LG298_24645) ssbB 4947227..4947595 (-) 369 WP_282173737.1 single-stranded DNA-binding protein Machinery gene
  LG298_RS24830 (LG298_24650) - 4947862..4948320 (+) 459 WP_283935217.1 YwpF-like family protein -
  LG298_RS24835 (LG298_24655) - 4948340..4948696 (-) 357 WP_404322839.1 hypothetical protein -
  LG298_RS24840 (LG298_24660) fabZ 4948765..4949193 (-) 429 WP_048007971.1 3-hydroxyacyl-ACP dehydratase FabZ -
  LG298_RS24845 (LG298_24665) - 4949318..4949587 (-) 270 WP_404322841.1 DNA-directed RNA polymerase subunit beta -
  LG298_RS24850 (LG298_24670) - 4949606..4950433 (-) 828 WP_197217661.1 flagellar hook-basal body protein -
  LG298_RS24855 (LG298_24675) - 4950468..4951307 (-) 840 WP_226618727.1 flagellar hook-basal body protein -
  LG298_RS24860 (LG298_24680) - 4951514..4952515 (-) 1002 WP_248349981.1 rod shape-determining protein -

Sequence

Protein


Download         Length: 122 a.a.        Molecular weight: 14156.21 Da        Isoelectric Point: 9.7402

>NTDB_id=616599 LG298_RS24825 WP_282173737.1 4947227..4947595(-) (ssbB) [Cytobacillus firmus strain ABH-509]
MINQVTLVGRLTKDPELKRTQEGIPVTNVTLAVNRQYRNQKGEIEADFVQCTLWKKTAENTSQYCRKGTLIGVTGRIQTR
HYDNQEKKRIYVTEVVAESVRFLERKKTEDIPVTVTKEELPF

Nucleotide


Download         Length: 369 bp        

>NTDB_id=616599 LG298_RS24825 WP_282173737.1 4947227..4947595(-) (ssbB) [Cytobacillus firmus strain ABH-509]
ATGATTAATCAAGTGACCCTGGTCGGAAGGCTGACAAAGGATCCTGAGCTGAAAAGGACACAGGAAGGAATTCCGGTAAC
AAATGTGACACTGGCAGTTAACCGCCAGTACCGCAACCAGAAGGGTGAAATCGAGGCAGATTTTGTGCAGTGCACCTTAT
GGAAGAAAACGGCTGAGAATACATCTCAGTATTGCCGGAAAGGAACCCTGATTGGAGTAACCGGGCGGATCCAGACAAGG
CATTATGATAATCAGGAAAAGAAGCGTATTTACGTAACAGAGGTGGTAGCGGAATCCGTCCGCTTTCTTGAACGGAAGAA
GACAGAGGACATTCCGGTGACTGTAACCAAGGAGGAGCTTCCGTTTTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbB Bacillus subtilis subsp. subtilis str. 168

63.303

89.344

0.566
  ssbA Bacillus subtilis subsp. subtilis str. 168

57.944

87.705

0.508
  ssb Latilactobacillus sakei subsp. sakei 23K

50.926

88.525

0.451
  ssbB/cilA Streptococcus pneumoniae TIGR4

40.152

100

0.434
  ssbB Streptococcus sobrinus strain NIDR 6715-7

40.152

100

0.434
  ssbB/cilA Streptococcus mitis NCTC 12261

40.152

100

0.434
  ssbB/cilA Streptococcus pneumoniae Rx1

39.394

100

0.426
  ssbB/cilA Streptococcus pneumoniae D39

39.394

100

0.426
  ssbB/cilA Streptococcus pneumoniae R6

39.394

100

0.426
  ssbB/cilA Streptococcus mitis SK321

39.394

100

0.426
  ssbA Streptococcus mutans UA159

38.636

100

0.418
  ssbB Lactococcus lactis subsp. cremoris KW2

43.925

87.705

0.385